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  3. RAFL09-89-I17

RAFL09-89-I17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06933)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-I17 - full reading 
TGAAGAAAAC TTACAATATG GATTCAAAAA GAAAGAACCA AGAACTTAGC 
ACATCAGAAA CCGCAGATCC CTCTCTCTCA AAGACGAATA AAAAGCAAAA 
GATTGATATG CAAGAAGCGA TGAAGAACCA AAACGAGGTT TCTCTGTTAC 
TTGTGGGGAA AGTAATCTCT GCCGTAGCCA AAAACTCAAA CTGTGTCTTC 
TCTCCGGCAT CCATCAACGC CGTTCTCACC GTGACCGCTG CCAACACCGA 
CAACAAAACA TTAAGATCTT TCATCCTCTC TTTTCTTAAG TCTTCTTCTA 
CCGAAGAGAC CAACGCCATC TTCCACGAAC TCGCTTCCGT CGTCTTCAAA 
GACGGAAGTG AAACAGGCGG GCCCAAAATT GCGGCGGTTA ATGGAGTGTG 
GATGGAGCAA TCGCTTTCGT GTAACCCCGA CTGGGAAGAT CTGTTTCTGA 
ACTTCTTCAA GGCTAGTTTC GCTAAAGTTG ATTTCCGACA CAAGGCTGAA 
GAAGTGCGTC TGGACGTAAA TACGTGGGCT TCACGTCACA CCAATGATCT 
CATCAAAGAA ATTCTTCCTC GTGGATCTGT TACAAGCCTA ACTAATTGGA 
TATATGGAAA CGCCTTGTAC TTCAAGGGAG CTTGGGAAAA GGCATTCGAT 
AAGTCCATGA CAAGAGATAA ACCATTTCAC CTTCTCAATG GCAAATCAGT 
CTCTGTGCCT TTCATGAGAA GCTATGAGAA ACAATTCATA GAGGCTTATG 
ATGGTTTCAA AGTCCTACGC CTTCCTTATC GACAAGGACG TGATGATACC 
AACCGCGAGT TTTCGATGTA TCTCTATCTC CCTGACAAGA AAGGTGAACT 
GGATAATCTT TTGGAGAGAA TAACATCTAA TCCTGGATTC TTGGATAGTC 
ATATTCCGGA ATACCGCGTT GATGTTGGTG ATTTCAGAAT TCCAAAATTT 
AAGATCGAAT TCGGGTTTGA AGCTTCAAGT GTTTTTAATG ACTTTGAGCT 
TAATGTGTCA TTACACCAGA AAGCTTTGAT TGAGATCGAT GAAGAAGGTA 
CTGAAGCTGC GGCTGCTACT ACTGTTGTAG TAGTAACCGG CAGCTGTTTG 
TGGGAGCCGA AGAAGAAGAT AGATTTTGTG GCAGATCATC CATTTCTCTT 
TTTGATTAGA GAAGACAAAA CCGGAACTCT TTTGTTCGCT GGTCAAATCT 
TCGATCCTTC TGAACTTTCT TCTGCGTTGG ACCGGGCTTA ACCGGATAAG 
GGTTTGGTAT TTTAGATTTA GTTCTTTTTA TAATTTTGGA CTATATTTTG 
ATCAAACAAA GTTTGTTGGG TTTAGGGGTT TAATTTGATT CTGGTTGGTT 
AAAGTTTTTG GAAAATGTTT AATGGATAGA ATCGAGATCA AACAAATTTT 
GTTGGGTTTA GGGGTTTAAC TAGATTGGCG ATTGCTACTG ATGTCGTTAT 
TGATGGAATG ATTTAAATAA ACAATTTAAA TAAATAATTT AAATTTCTCA 
TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT2G14540.1 [+] show detail - serpin 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3.8e-48
HMMPfam Protease inhibitor I4, serpin 3.3e-78
PatternScan Protease inhibitor I4, serpin 0
HMMSmart Protease inhibitor I4, serpin 5.6e-49
superfamily Protease inhibitor I4, serpin 9.8e-85
HMMPanther Protease inhibitor I4, serpin, plant 8.2e-185
HMMPanther Protease inhibitor I4, serpin 8.2e-185

See the detailed result >

AT2G14540.1

Model type
Protein coding
Short Description
serpin 2
Computational Description
serpin 2 (SRP2); FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: DNA repair, response to DNA damage stimulus; LOCATED IN: nucleus; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT1G62170.1); Has 6246 Blast hits to 6203 proteins in 468 species: Archae - 66; Bacteria - 371; Metazoa - 4782; Fungi - 10; Plants - 340; Viruses - 461; Other Eukaryotes - 216 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-I17 introduced

  • F14941 - rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / cauline leaf::epinastic / whole plant::decreased height
  • F27717 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found