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RAFL09-89-I20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88344)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL09-89-I20 - 5 prime EST 
GACTCCAAAC TCCAAAGCAT CAATATTTTA TCACTCCTCT TTTCTTCCAC 
GCAAACCCAA TTCTCTTCGT CTTCTTCTTT TGCTTTTCTC CCCTAAATTC 
GTCGATCAAA TTCTTGTCTT TTCAACTTCT TCATCGAATT TTCCATTGCC 
CATAGCCTCT GTATTTGATT CCTCCTTCTC TAAAGCTTCG GATATTAAGA 
CAATTATATC TTCCTAGCTG CTTATAGACC TTCGCTTTCT AATTGCTGTT 
CCTTTCGTGG GTCTCTGGAT TTGTAGTTGC ATTCTCATTG CGCACTACAC 
TTTCTTCAAA TTTCCGCGTG GTAAGCAGGG AATGGACCGG CTGTTTTGGC 
CAATCGTCTG TGTTTACAAA TGATGAGCAG TGGGCATAAG GGTCCAAATG 
TACGTAACTT TTTTAAATGG CANCGTGGTG AATCATCATC GTCTTTGACT 
ACTGGATTGC TTCATANTGA GTCACACGAG ATTGAGCTAT CTAACTACGG 
GAGGAATACN AAGTCC

Gene models with high sequence identity

  1. AT2G31260.1 [+] show detail - autophagy 9 (APG9)
    E-value: 0; Score: 99.22

3 prime EST [+] show sequence

Nucleotide sequence: RAFL09-89-I20 - 3 prime EST 
CGAAAAACAC CATTTTTAAG GACCTATTTT ATATACACAA CAATAAAGAA 
TTGCATGTAT TGTTAGGATG AAACATAACC AAAGAAAAAA AAAAAAAAGA 
GGAGAGATTT GTTATTATTC CCACATTTTT TTTTCCAAAT ACAGAGAACA 
CTTTCTACAA AAGCATCTCT TTTATCTTCC TTCTTCATCC ACCATAAAAA 
AGACTGAACA AAGAAACAAT TTTGAATCAA AAAAAT

Gene models with high sequence identity

  1. AT2G31260.1 [+] show detail - autophagy 9 (APG9)
    E-value: 2e-121; Score: 98.72

AT2G31260.1

Model type
Protein coding
Short Description
autophagy 9 (APG9)
Curator Summary
Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence.
Computational Description
autophagy 9 (APG9); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 9 (InterPro:IPR007241); Has 489 Blast hits to 477 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 166; Plants - 51; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-I20 introduced

  • F16722 - rosette leaf::increased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::epinastic
  • F20333 - Specific phenotypes were NOT observed.
  • F25138 - Specific phenotypes were NOT observed.
  • F25247 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found