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  3. RAFL09-89-J12

RAFL09-89-J12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06935)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-J12 - full reading 
ATGAAATTGG TTTGTTGACT GTAAATTACA TCGGAGAATT GTAGTGATCG 
GAGAAAATGA GTGGCGTGGT TGGGTTTGTT GGTCTTGATT CTTTCAGCTT 
CGAATTAGCT TCTTCGCTTC TTCGTTCTGG GTTTAAGGTT CAAGCATTCG 
AGATAAGTAC AGAATTAGTG GAGAAGTTCA TTGAATTGGG AGGACACAAA 
TGTGACAGCC CTGCAGATGT TGGGAAAGCT GCAGCAGCCG TTGTGGTTGT 
ACTATCCCAC CCTGACCAAA TTCAAGATGT CATTTTTGGT GATGAGGGTG 
TTATGAAAGG TCTACAGAAG GACGCTGTAT TGCTTTTGTC TTCGACAATA 
TCGACTTTGC AACTCCAGAA ACTAGAGAAA CAACTTACAG AGAAAAGAGA 
GCAGATTTTT GTAGTTGATG CCTATGTTTT AAAAGGGATG TCTGAGCTTC 
TTGATGGAAA ACTAATGATA ATAGCATCTG GAAGGTCAGA TTCGATCACA 
AGAGCACAAC CCTATCTTAC TGCAATGTGT CAAAATCTGT ACACCTTTGA 
GGGAGAAATT GGTGCTGGAA GTAAAGTTAA AATGGTGAAT GAGTTGCTTG 
AGGGCATACA TCTTGTTGCT GCTGTGGAGG CTATATCTTT AGGTTCTCAG 
GCGGGTGTGC ATCCATGGAT ACTTTATGAC ATAATTTCCA ATGCTGCTGG 
AAATTCATGG ATTTACAAGA ATCATATTCC GTTGTTGCTA AAAGATGACA 
TAGAGGGTCG CTTCCTCGAT GTTCTCTCTC AGAATCTGGC CATTGTTGAA 
GATAAAGCCA AATCGCTCCC ATTTCCTGTC CCACTTTTGG CAGTTGCACG 
CCAACAACTA ATCTCTGGAA TATCACAGAT GCAGGGAGAT GATACAGCTA 
CTTCATTGGC TAAGATCTCG GAAAAAGTAC TTGGTGTTGG CATATTAGAA 
GCAGCCAATA GAGAACTTTA TAAGCCAGAG GATTTGGCCA AAGAAATTAC 
TACTCAAGCA AAGCCTGTGA ATAGAATTGG TTTTATTGGT CTTGGAGCAA 
TGGGTTTTGG CATGGCAGCA CACCTGTTGA AATCAAATTT TTCTGTCTGT 
GGTTATGACG TATACAAGCC AACACTTGTC AGATTTGAGA ATGCCGGGGG 
ATTGGCGGCA AATTCTCCAG CTGAAGTGAC GAAAGATGTA GATGTTCTTG 
TAATTATGGT AACAAACGAG GTTCAGGCTG AGGATGTCTT GTATGGACAT 
CTTGGAGCGG TTGAAGCTAT ACCATCTGGA GCAACTGTTG TACTTGCGTC 
AACAGTATCT CCCGCGTTTG TTAGCCAACT TGAAAGGCGT CTAGAAAATG 
AGGGAAAAGA CCTAAAGCTA GTTGATGCTC CTGTGTCTGG TGGTGTCAAG 
AGGGCTGCCA TGGGGGAGCT TACGATAATG GCTTCAGGTA CCGATGAAGC 
ACTTAAGTCT GCGGGACTTG TGTTATCAGC ATTAAGTGAG AAGCTCTACG 
TGATTAAAGG AGGTTGTGGG GCAGGAAGTG GTGTAAAAAT GGTCAATCAA 
TTGCTTGCGG GAGTTCATAT CGCATCAGCT GCCGAGGCAA TGGCATTTGG 
AGCTCGGTTA GGTCTGAATA CTCGAAAGCT ATTCAATGTT ATTTCCAACA 
GCGGTGGAAC ATCTTGGATG TTTGAAAATC GTGTTCCGCA CATGCTGGAT 
AATGATTACA CACCATACTC TGCTCTTGAT ATTTTTGTCA AGGATTTGGG 
AATTGTTACC CGAGAAGGTT CATCCCGTAA AGTTCCACTC CATATATCAA 
CAGTGGCACA CCAGCTATTC TTAGCCGGCT CTGCTGCGGG CTGGGGACGG 
ATAGATGATG CTGGAGTGGT GAAGGTTTAT GAAACCCTTG CTGGAATTAA 
AGTCGAAGGG AGACTTCCTG TTCTGAAGAA ACAAGACCTA CTGAAATCTC 
TTCCAGCTGA ATGGCCTTCA GACCCTACAA CTGACATACA TAGACTAAAT 
ATGGGAAACT CGAAGACATT GGTTGTTCTT GATGATGATC CAACTGGCAC 
ACAAACTGTT CATGACGTAG AGGTTTTAAC TGAATGGAGT GTTGAATCTA 
TTTCTGAGCA GTTTAGAAAA AAGCCTGCAT GCTTCTTCAT TTTGACAAAT 
TCAAGGTCCC TGAGCCCTGA GAAGGCTAGT GAATTGATCA AAGACATCTG 
TTCCAACCTA TGTGCTGCAT CAAAAGAAGT TGGCAATGCT GACTACACGA 
TTGTTCTGAG GGGTGATTCA ACATTACGTG GTCATTTTCC TCAGGAAGCA 
GATGCTGCTG TCTCAATACT TGGGGAAATG GATGCATGGA TTATTTGCCC 
CTTCTTCCTT CAAGGGGGAC GTTATACTAT TGATGATGTG CATTATGTTG 
CGGATTCTGA TAGGCTCGTT CCTGCAGGAG AGACAGAGTT TGCCAAAGAT 
GCATCCTTTG GATATAAATC CTCAAATCTC CGTGAGTGGG TTGAGGAGAA 
AACAGCTGGC GTCATTCCGG CTAACAGCGT TCAGTCGATC TCAATTCAGC 
TTTTAAGAAA AGGTGGCCCT GATGCAGTGT GTGAGTTTCT GTGCAGTTTA 
AAGAAGGGGT CTACATGTAT TGTCAACGCC GCTAGTGAAA GAGACATGGC 
TGTATTTGCA GCCGGGATGA TCCAGGCAGA ACTGAAAGGG AGATCCTTTT 
TATGCCGCAC TGCTGCTAGC TTTGTGTCTG CTCTAATAGG GATTATTCCA 
AAAGATCCTG TGTTGCCAAA AGATTTCGAA TCTAACAAAG AAAGCAGTGG 
TGCACTAATA GTTGTAGGCT CATATGTCCC GAAAACAACA AAGCAGGTTG 
AAGAACTTCA ATCACAACAT AACCAGAATT TAAGGAGCAT CGAGATCTCT 
GTAGAAAAAG TTGCTCTCAA GTCATCTGAA GTGAGAGATG AAGAAATCAG 
AAGAGCAGTT GAGATGGCCG ATGCTTTCCT TCGGGCTGGC AGGGAGACTC 
TAATTATGAG CAGTCGTGAA CTCATCACGG GAAAAACATC TTCGGAAAGT 
CTTGATATTA ACAGCAAAGT GAGCTCCGCT CTGGTTGAAG TAGTGAGCCA 
GATATCGACC AGACCTCGTT ATATTCTTGC TAAGGGTGGA ATTACGTCAT 
CAGACACAGC AACGAAAGCC CTGAAAGCAC GACGTGCACT TGTGATTGGT 
CAAGCCCTTG CTGGTGTTCC AGTATGGAAG TTAGGTCCAG AAAGTAGACA 
TCCAGGGGTC CCCTACATTG TTTTCCCTGG TAATGTTGGT AACAGCACAG 
CGCTTGCAGA AGTTGTGAAG TCTTGGTCAG TGGTAGCAGG ACGGTCGACA 
AAAGAGCTGC TTCTGAATGC AGAAAAAGGT GGATATGCAG TTGGAGCATT 
TAACGTGTAT AACCTGGAAG GAATAGAAGC TGTTGTAGCG GCCGCAGAGG 
AAGAAAATAG TCCTGCTATA TTGCAGGTCC ATCCAGGTGC CTTTAAACAA 
GGAGGCATTC CTTTGGTTTC ATGTTGCATC TCTGCAGCTG AACAAGCCAG 
GGTTCCAATA TCCGTACACT TTGATCATGG AACTACAAAG CATGAGCTAT 
TAGAAGCTCT TGAGCTAGGA CTAGATTCAG TGATGGTAGA TGGTTCTCAT 
CTTTCCTTCA CAGAAAATTT ATCCTACACG AAATCCATAA CAGAGTTGGC 
CCGTTCCAAA AACATTATGG TGGAAGCTGA ACTAGGCCGA CTCTCAGGAA 
CAGAGGATGG CTTGACTGTT GAAGACTATG AAGCAAAGCT CACCAACGTT 
AACCAGGCTC AGGAATTTAT GGAAACTGGT ATAGATGCTT TGGCTGTGTG 
TATAGGAAAT GTCCATGGAA AGTACCCCAA GTCCGGTCCA AACCTCAAGC 
TTGATTTACT TAAGGAACTG CACGCCTTAA GCTCGAAGAA AGGCGTTTTT 
CTTGTTCTTC ACGGAGCTTC TGGTTTGTCT GAGAACCTTA TCAAGGAATG 
CATTGAGAAT GGAGTGAGGA AGTTCAACGT GAACACAGAA GTAAGAACGG 
CTTACATGGA AGCTCTTAGC TCTGGGAAGA AGACCGACAT TGTTGATGTC 
ATGTCCGCAA CAAAAGCAGC CATGAAAGCT GTGATCGCAG ATAAGATCCG 
TCTCTTTGGC TCTGCCGGAA AAGCTTGAGT TGTTGATAAA AAAATGTCCG 
ATCAATTAGT TAAGTACAAT TGTACATCAC ATCCAAAGAA TAAAAAAACA 
ACAAATATTA CATCACATCC AAAGAAGATG AATGCATTGT ATGCAATGCA 
GATGCAGTGT TGTTGGAAAT AAAGAAATCA TTTTTAGTAC TAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT1G18270.1 [+] show detail - ketose-bisphosphate aldolase class-II family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan 3-hydroxyisobutyrate dehydrogenase-related, conserved site 0
HMMPfam Ketose-bisphosphate aldolase, class-II 4.7e-90
HMMPfam 6-phosphogluconate dehydrogenase, NAD-binding 9.7e-25
HMMPfam 6-phosphogluconate dehydrogenase, NAD-binding 9.5e-39
HMMPfam Protein of unknown function, DUF1537 3.8e-26
superfamily Aldolase 5.2e-89
superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 2.2e-37
superfamily NAD(P)-binding domain 2e-33
superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 3.8e-27
superfamily NAD(P)-binding domain 1.7e-22
Gene3D NAD(P)-binding domain 1.5e-26
Gene3D Dehydrogenase, multihelical 1e-23
Gene3D NAD(P)-binding domain 5.6e-35
Gene3D Dehydrogenase, multihelical 3.7e-36
Gene3D Aldolase-type TIM barrel 1.3e-84
HMMTigr Ketose-bisphosphate aldolase, class-II 5.4e-70
HMMPanther 3-HYDROXYISOBUTYRATE DEHYDROGENASE 2.3e-139
HMMPanther 3-hydroxyacid dehydrogenase/reductase 2.3e-139

See the detailed result >

AT1G18270.1

Model type
Protein coding
Short Description
ketose-bisphosphate aldolase class-II family protein
Computational Description
ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), Protein of unknown function, DUF1537 (InterPro:IPR010737), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1); Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264; Bacteria - 21742; Metazoa - 568; Fungi - 820; Plants - 423; Viruses - 1; Other Eukaryotes - 10228 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-J12 introduced

  • F26237 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found