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  3. RAFL09-89-M10

RAFL09-89-M10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06940)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-M10 - full reading 
AATTTTCCTT TTCTCCGATC AATTCCAAAA CCCTACTTCA ACCCTGCGAT 
TCATTCATCA TTCACAGAGT TTGAAGAAAA CGCCGAAATC GGAAATGGCG 
TCTATTGTTC TTCGATCTCG CCTGTTGCCA AGATTAGCAA AGCTCAGATC 
TCGTAATCTG AGATGTTTCT CTGCGGAAGC ATCTTCGACG AATTCTACAT 
CTAGGTATTC GGGAGTCACC TCTACCCAGT CGATGTTTTC TGATTTTCCA 
CCGCCAAATC AGCCGCCACC TCCTCCTCCT CCTCAAGTGG AAGCTGCTGC 
CGCGGCTGCG ACGGGAAAGG AGAGGAAAGG TCTTAAGTAT CTTGGTTACG 
CACTCCTCTG GGCACTCACT GGTGCTACCG CTGCTACTGG TTACGCAAGT 
TTTGCTTACA CGATAGATGA AGTGAATGAA AAGACTAAGG CGTTCCGAGA 
ATCAGCTACG AAGACACCAG TTATTAAATC TTCTGGCATT GATGTGATTG 
ATAAATATCA GACTAAGTTG TACTCTGCTG CAATGACAGG TTCTGCTAGA 
GCCATTGATA AGTATTTAGA GCTTAGGGAA ATTGTGGAGG AACAAGTGAA 
AGGCTTCACG GAACCTCTCT CGGAAAAGCT TCTTCCGGAT CTGCACCCCG 
CAGAACAGCA TGTCTTCACT CTAGTTCTTG ATTTAAATGA GACACTGCTT 
TACACTGACT GGAAGCGGGA AAGAGGGTGG AGGACATTCA AAAGACCAGG 
TGTCGATGCA TTCTTGGAGC ATCTTGGGAA ATTCTATGAG ATTGTCGTGT 
ATTCTGACCA GATGGAGATG TATGTACTCC CGGTCTGTGA GAAATTAGAC 
CCAAATGGCT ACATACGTTA TAAGCTAGCA AGAGGCGCTA CTAAATATGA 
AAATGGAAAG CACTATAGGG ATCTGTCAAA GCTGAACAGA GATCCGAAGA 
AGATTCTGTT TGTTAGCGCA AATGCCTTTG AATCAACCCT TCAGCCAGAA 
AATAGCGTGC CAATCAAGCC TTACAAACTA GAAGCTGATG ACACAGCCCT 
AGTTGACCTG ATACCCTTCC TTGAATATGT TGCACGTAAC AGTCCAGCAG 
ACATCAGACC GGTTCTGGCC TCTTTTGAGA GAAAAGATAT TGCCAAAGAG 
TTCATTGACA GGTCCATAGA GTATCAAAAG CGAAAGCAAG GACAACTGGG 
ACAAGGTCGA TTCTGGAGGC GTTAAAGGAT CTAAGATTTA TGTATAGAGC 
GAGAGACAAT TATATCATCA TTGATGGTGC ACACCATAAA ATAGGAACAT 
GAGCTACCGT TCTTCGCTAT GGATTTATTA GGTAAAATCC GAATTAAAAT 
ACTGTCTTTG TCATCAAAGA GTTTTTATGT TACCCAATTT TCCTCGTCTT 
TCTCTCTGCT TTACATAGAA AATTTCTATG AGAACGAAAA AGAAATTATC 
ATATGGAAGG TTCATTTTTC GTTGACTAAT AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G55900.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 7.1e-44
HMMPanther TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 5 7.8e-99
HMMPanther NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-REL 7.8e-99
HMMPfam NLI interacting factor 1.9e-36
ProfileScan NLI interacting factor 36.986
superfamily HAD-like 7.7e-46
HMMSmart NLI interacting factor 3.6e-50

See the detailed result >

AT1G55900.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator Summary
component of a translocase in the mitochondrial inner membrane
Computational Description
TIM50; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2137 Blast hits to 2133 proteins in 243 species: Archae - 0; Bacteria - 8; Metazoa - 726; Fungi - 412; Plants - 369; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-M10 introduced

  • F00111 - Specific phenotypes were NOT observed.
  • F04505 - Specific phenotypes were NOT observed.
  • F07144 - rosette leaf::decreased size / rosette leaf::epinastic / cauline leaf::epinastic / sporophyte vegetative stage::decreased speed / fruit::decreased length
  • F13950 - Specific phenotypes were NOT observed.
  • F16037 - Specific phenotypes were NOT observed.
  • F17047 - Specific phenotypes were NOT observed.
  • F26121 - Specific phenotypes were NOT observed.
  • F26340 - Specific phenotypes were NOT observed.
  • F30309 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found