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RAFL09-89-N21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06943)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-N21 - full reading 
ATTGAGCTTC TTTCTTTTTT CCTGAGTCTT TTAGTCTGAT CTCTTACAAG 
AATGGCGTTC GCAGGAACAA CCCAGAAATG CATGGCATGT GACAAAACAG 
TTTATCTTGT CGACAAGTTA ACCGCCGATA ACCGGGTCTA CCACAAAGCT 
TGTTTCCGAT GTCACCATTG CAAAGGAACT CTCAAGCTTA GCAATTACAA 
CTCCTTTGAA GGAGTTCTCT ACTGCAGACC ACATTTCGAT CAAAACTTCA 
AGAGAACTGG AAGTCTTGAG AAAAGCTTCG AAGGGACACC AAAGATTGGG 
AAACCTGATA GGCCTTTGGA GGGAGAGAGA CCTGCTGGAA CCAAAGTTTC 
GAATATGTTT GGTGGAACAC GAGAGAAATG CGTTGGTTGC GACAAAACCG 
TGTATCCAAT TGAGAAGGTA TGGTGAATGG AACATTGTAC CACAAGAGCT 
GCTTCAAGTG TACACATGGA GGCTGCACGA TAAGCCCTTC GAATTACATA 
GCTCACGAGG GTAAGCTATA TTGCAAGCAT CATCATATTC AGCTGATCAA 
GGAGAAAGGA AACTTGAGCC AGCTCGAAGG AGGAGGAGAG AATGCCGCCA 
AGGACAAAGT CGTCGCTGCT TAAAGAAACA ATTCAATCTC TCTGGGATGA 
TTTTGACTAT CGAAGAATCA AAAGAGTCAC TACTTCTCCA TCGATCGATA 
ACATATATTG GTTTTGTTTC TTCCTACGTT TGTGTTTTTC TTTTTGGTCT 
TTAATATGTT TTTTTTTTTT TTGGGACCTT TGTTCACTCT TTTATTGGGT 
TTCTTGAAAT GAAACTAGAG AAACAAAGAA ATAATGGATG TTTGCTTATG 
AGATATGAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G10200.1 [+] show detail - GATA type zinc finger transcription factor family protein
    E-value: 0; Score: 99.77

 

InterPro Scan Digest

Program Description E-value
superfamily Glucocorticoid receptor-like (DNA-binding dom 2e-15
superfamily Glucocorticoid receptor-like (DNA-binding dom 4.9e-07
superfamily Glucocorticoid receptor-like (DNA-binding dom 1.3e-06
HMMPanther TRANSCRIPTION FACTOR L2 1.8e-41
HMMPanther LIM DOMAIN CONTAINING PROTEIN 1.8e-41
HMMPanther TRANSCRIPTION FACTOR L2 2.4e-14
HMMPanther LIM DOMAIN CONTAINING PROTEIN 2.4e-14
PatternScan Zinc finger, LIM-type 0
HMMPfam Zinc finger, LIM-type 3.3e-13
HMMPfam Zinc finger, LIM-type 2.9e-12
ProfileScan Zinc finger, LIM-type 13.147
Gene3D Zinc finger, LIM-type 3.7e-21
Gene3D Zinc finger, LIM-type 1.5e-09
HMMSmart Zinc finger, LIM-type 4.6e-11

See the detailed result >

AT1G10200.1

Model type
Protein coding
Short Description
GATA type zinc finger transcription factor family protein
Computational Description
WLIM1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 3462; Fungi - 43; Plants - 506; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-N21 introduced

  • F08533 - Specific phenotypes were NOT observed.
  • F23449 - Specific phenotypes were NOT observed.
  • F24105 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / stem::abnormal / root::present in greater numbers in organism
  • F26732 - seed::increased size / seed::increased length
  • F28337 - Specific phenotypes were NOT observed.
  • F30042 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found