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  3. RAFL09-89-O12

RAFL09-89-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06946)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-O12 - full reading 
AAGAGCCTCG GAGCATTCGA AAAGTTCGCC GGAAAAACAA AAACATGCCG 
ACGAACAACA CTCCGTTCCT CACTATTTTT CTCCTCTTTC TTGGTTTACT 
CCGGTTCGAT TCATTTCCCG GTTTAGAAGC TGCAACCGGG AAATTAGCTT 
CGATTCCAGG ATTATACGTG TTCGGAGATT CGTTAGTTGA TGCCGGCAAC 
AATAATTACT TACCAATTTC AATATCTAAA GCTAATTATC CACATAACGG 
CGTCGATTTT CCGAACAAGA AACCTACCGG AAGATTCTGT AACGGCAAGA 
ACGCCGCCGA TGCTATCGCT GAGAAATTTG GTTTACCGTT ACCACCTCCC 
TATCTCTCAC TTAGAGGCTT ACTAAAAAGG GAGAAGAGAA AATCTGCCGC 
CGTGACTGGT GTGAATTTTG CTTCCGGTGG AGCCGGAATC TTCAACAGTT 
CCGACCAAAA ACTTGGACAA GCTATTCCTT TATCCAAGCA AGTCAACAAT 
TGGCTCTCTA TTCATGAAGA AGTCATGAAA CTTGAACCAT CCGCAGCACA 
GCTTCACCTA TCCAAATCTC TATTCACTGT TGTCATAGGA AGTAACGATC 
TTTTCGATTA CTTTGGATCG TTCAAACTCC GACGCCAGAG CAATCCTCAA 
CAATATACAC AATTAATGGC TGATAAACTC AAAGAGCAAT TGAAGAGAAT 
TCACGATAGT GGAGCGCGTA GATTCCTTAT CATCGGGGTA GCACAAATTG 
GTTGCACACC GGGAAAAAGA GCGAAGAACT CGACACTCCA TGAATGTGAC 
GAAGGGGCAA ACATGTGGTG CTCTTTGTAC AACGAAGCTC TAGTAAAGAT 
GCTGCAACAA CTCAAACAAG AATTACAAGG CTCAATAACT TACACTTACT 
TTGATAACTA CAAGTCCTTA CATGACATTA TTTCCAACCC TGCCCGTTAC 
GGTTTTGCTG ACGTTACATC TGCGTGTTGT GGAAATGGGG AATTGAACGC 
AGACCTTCCT TGTCTGCCTT TGGCGAAGTT ATGTTCAGAC AGAACCAAAC 
ATCTTTTTTG GGATCGCTAT GGCCATCCCA CTGAAGCTGC TGCTCGGACC 
ATCGTCGATC TTATGTTGAC TGATGATACA CATTACTCAT CTCCTATAAC 
TCTTACTCAG TTGGTCTCTA CATGATCAAT AATACACACG GCTTCGTTTT 
TTTGGGAAGA GTACATAATC AAGTAGACAA ATGGGATTTG GAAACTTGAT 
TTGTAATCAA GTATACGTTA CTAAATTTGT TACCAATGAA ATATATAAGT 
TTCTTAAAAA AAAATAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G55050.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Lipase, GDSL, active site 0
HMMPfam Lipase, GDSL 4.5e-35
HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 8.4e-28
HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 8.4e-28

See the detailed result >

AT5G55050.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-O12 introduced

  • F11013 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found