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RAFL09-89-O14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06947)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-O14 - full reading 
AGAGAGAAAG AGAGAGAAAC AATGGAAACG GAAGGAAGAA GACGAGAAGT 
GGTTGTTTCA TCTCTCCAAT TCGCTTGCTC CGACGATATC TCCACCAATG 
TCGCCGCCGC TGAGCGGTTC GTCTCTCTCT CTTCCTCCCT CCCTCTCTCT 
AATTATCAAT CTCTCCCATC TTCCTCCTCC TTCAAATTTC CATATGCATT 
AGTCAGAGAA GCTCACGCTA AAGGAGCTAA TATCATTCTT ATTCAGGAAC 
TTTTTGAAGG ATATTACTTC TGTCAAGCAC AAAGAGAAGA CTTCTTTAAG 
CGAGCCAAGC CTTACAAGAA CCATCCTACC ATTGCAAGGA TGCAGAAGCT 
GGCAAAGGAA TTGGGTGTAG TGATACCTGT TAGTTTCTTT GAGGAGGCAA 
ATACTGCACA TTACAATTCG ATTGCTATAA TTGATGCTGA TGGAACTGAC 
TTGGGAATTT ATAGGAAGTC TCATATTCCT GATGGACCTG GTTATCAAGA 
GAAGTTTTAT TTCAATCCTG GAGATACTGG CTTTAAGGTT TTCCAGACGA 
AGTTTGCTAA AATTGGAGTG GCTATATGTT GGGATCAGTG GTTTCCTGAG 
GCAGCTCGAG CTATGGTTCT ACAGGGTGCT GAAATACTGT TTTATCCCAC 
TGCTATTGGT TCTGAACCTC AAGACCAGGG ATTGGATTCG CGTGATCATT 
GGAGGAGAGT TATGCAAGGG CATGCTGGAG CTAACGTGGT ACCTCTAGTA 
GCCTCAAATC GCATAGGGAA GGAAATAATT GAAACTGAGC ATGGACCTAG 
TCAGATCACT TTCTACGGAA CTTCCTTCAT TGCCGGACCA ACAGGTGAAA 
TTGTGGCCGA GGCAGATGAT AAATCGGAAG CTGTTCTTGT AGCACAGTTT 
GATCTTGATA TGATCAAGTC GAAAAGGCAA AGCTGGGGAG TGTTCCGTGA 
CCGTCGTCCA GATTTGTACA AGGTGCTTCT TACTATGGAT GGTAATCTCT 
AAATCTTTTG CTGTTGGAAG CTTTGATCTT TTGTTTAAGA TCACACTGGG 
GAAATCCATT AACAACAATT ATTACTGGCT TAACCTTAAA GGGTAAGTAA 
GCCCAAAAAT AAAAGACCAG AAAAAGTTTA ATACATCTCA AAATTTGTTC 
TGGCACTTTC ATCTTTCTAG GTTGTCATAT GGAAAAAAAT TCGATACGTT 
TATATAAACA CTAATGCATA AGTTGTATTT GGAACAGAAA AAAAAAAAAA 
AAA

Gene models with high sequence identity

  1. AT2G27450.2 [+] show detail - nitrilase-like protein 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 6.2e-73
HMMPanther NITRILASE-RELATED 3.4e-68
Gene3D Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 9.1e-80
HMMPfam Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3.2e-32
ProfileScan Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 47.509
HMMTigr N-carbamoylputrescine amidase 2.5e-210

See the detailed result >

AT2G27450.2

Model type
Protein coding
Short Description
nitrilase-like protein 1
Curator Summary
Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.
Computational Description
nitrilase-like protein 1 (NLP1); CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), N-carbamoylputrescine amidase (InterPro:IPR017755); BEST Arabidopsis thaliana protein match is: beta-ureidopropionase (TAIR:AT5G64370.1); Has 11784 Blast hits to 11734 proteins in 2281 species: Archae - 221; Bacteria - 8133; Metazoa - 478; Fungi - 416; Plants - 310; Viruses - 11; Other Eukaryotes - 2215 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-O14 introduced

  • F13428 - seed::increased size / seed::increased length
  • F19604 - Specific phenotypes were NOT observed.
  • F23347 - Specific phenotypes were NOT observed.
  • F25209 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found