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  3. RAFL09-90-A16

RAFL09-90-A16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17899)

full reading [+] show sequence

Nucleotide sequence: RAFL09-90-A16 - full reading 
GACGCCGATT TGCGAGATAC ACACAGTCTC ACCTAAAAAT CGCAAAAGAA 
GAAAAATTCG GATCAAAATT GTCTTCAAGC ATCATGGATC CATACAGGGT 
TCGTCCTTCA AGCGCTCATG ATTCCCCTTT CTTCACTACA AACTCGGGTG 
CTCCTGTCTG GAACAACAAC TCTTCTTTGA CTGTCGGAAC TCGAGGTCCA 
ATCCTTCTGG AGGACTATCA TCTGCTTGAG AAACTCGCTA ACTTTGACAG 
GGAGCGGATT CCTGAGAGGG TTGTTCATGC CAGGGGAGCC AGTGCTAAGG 
GTTTCTTTGA AGTCACTCAT GACATTACCC AACTTACTTC TGCTGATTTT 
CTTCGAGGAC CTGGTGTTCA GACTCCTGTT ATCGTTCGTT TCTCAACTGT 
CATCCATGAG CGTGGCAGTC CCGAGACTCT CAGAGATCCC CGTGGTTTTG 
CTGTTAAGTT TTACACCAGA GAGGGGAACT TTGATCTTGT TGGGAACAAC 
TTCCCTGTAT TCTTCGTCCG TGATGGAATG AAATTCCCTG ACATGGTCCA 
TGCATTGAAA CCGAATCCCA AGTCTCACAT TCAGGAGAAC TGGAGGATAC 
TGGACTTCTT CTCCCACCAC CCAGAGAGTT TGCACATGTT TTCATTTCTC 
TTTGATGATC TCGGTATCCC ACAGGACTAC AGGCACATGG AAGGCGCTGG 
GGTCAACACT TACATGCTAA TCAACAAAGC TGGAAAAGCT CACTATGTGA 
AATTCCACTG GAAGCCGACT TGTGGGATCA AATGCCTGTC GGATGAGGAA 
GCTATCAGAG TTGGAGGAGC CAATCACAGC CATGCCACCA AAGATCTCTA 
TGACTCGATC GCAGCCGGGA ACTATCCGCA GTGGAATCTC TTCGTTCAGG 
TGATGGATCC TGCCCATGAA GACAAATTTG ACTTCGATCC GCTTGATGTC 
ACAAAGATCT GGCCTGAAGA TATCTTGCCT TTACAACCTG TTGGTCGCTT 
GGTCTTGAAC AAAAACATCG ACAACTTCTT TAATGAGAAC GAACAGATTG 
CATTCTGTCC TGCTCTTGTG GTTCCAGGCA TCCACTATTC AGATGATAAG 
CTACTCCAGA CCCGGATCTT CTCCTACGCT GATAGTCAGA GACACCGTCT 
TGGACCAAAC TATCTGCAAC TACCTGTTAA TGCCCCTAAA TGTGCTCACC 
ACAACAATCA CCATGATGGT TTTATGAACT TCATGCACAG GGATGAGGAG 
GTCAATTACT TCCCTTCAAG GTTGGATCCA GTTCGCCATG CCGAAAAATA 
CCCTACAACT CCTATTGTCT GCTCTGGAAA TCGTGAGAAG TGCTTCATCG 
GGAAGGAGAA CAACTTCAAG CAACCAGGGG AGAGATACCG GTCCTGGGAT 
TCAGACAGGC AAGAACGATT CGTGAAGCGT TTTGTTGAAG CGCTTTCGGA 
GCCTCGTGTC ACGCACGAAA TCCGCAGCAT TTGGATCTCT TACTGGTCTC 
AGGCAGACAA ATCTCTGGGA CAGAAACTAG CAACTCGTCT TAACGTGAGG 
CCAAACTTCT GAATGATATC ATCTCTAAAG ACTAAGTGAA ATCCTATAAA 
CTCAATATGC TCCTCTTACG GTTTGGTTTC TAAGTAATCT CGTTTATTGA 
CAATGAAACG CTTAAAGAAG GGTACTAGTT CCTGTTTGTA ATCTTCTTTT 
CAAAATATTA ACGATTATTT TCTAAGGCAA ATAAATAAAA AGCTATGACA 
AAAAAAA

Gene models with high sequence identity

  1. AT1G20630.1 [+] show detail - catalase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Catalase 0
PatternScan Catalase 0
ProfileScan Catalase, N-terminal 75.394
HMMPfam Catalase related subgroup 1.2e-183
HMMPfam Catalase-related immune responsive 9.4e-22
Gene3D Catalase, N-terminal 7.6e-209
superfamily Catalase-like domain, haem-dependent 2.2e-215
FPrintScan Catalase related subgroup 2.5e-81
FPrintScan Catalase related subgroup 2.5e-81
FPrintScan Catalase related subgroup 2.5e-81
FPrintScan Catalase related subgroup 2.5e-81
FPrintScan Catalase related subgroup 2.5e-81
FPrintScan Catalase related subgroup 2.5e-81
HMMPanther Catalase-like domain, haem-dependent 7.1e-284

See the detailed result >

AT1G20630.1

Model type
Protein coding
Short Description
catalase 1
Curator Summary
Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.
Computational Description
catalase 1 (CAT1); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cytosolic ribosome, cell wall, peroxisome, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 6108 Blast hits to 6088 proteins in 1842 species: Archae - 22; Bacteria - 4283; Metazoa - 677; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-90-A16 introduced

  • F12614 - Specific phenotypes were NOT observed.
  • F16341 - Specific phenotypes were NOT observed.
  • F26905 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found