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  3. RAFL09-90-B17

RAFL09-90-B17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08993)

full reading [+] show sequence

Nucleotide sequence: RAFL09-90-B17 - full reading 
ATCATCCAAC ATGGCATCAT CATCAATCCT CATCCCTCCG ATTCTCACCC 
GTCGTAATCT CCTCCTCTCC ACCACAATCG CCACCGTAAC TCCACCACCA 
CCAGCTAAAC CACCTTCCCC CGACATCACA ATAACCGATC GAGTCTTCCT 
CGACTTCTCC CTCTGCCCCA CCTACTTCCG CTCAGATCCC TCCGCGACAC 
TCTCCTCCAC CACACCTTGC TCCGATTCAA CTCCTCTCGG CCGCGTCGTT 
CTCGGATTAT ACGGCCGTCA CGTTCCCATA ACCGTCTCAA CTTTCAAACG 
TATGTGTACT TCATCTTCCA CATCTTACAA AAACACACCT GTCCACAAAA 
TCTTCCCTGG TCAGTATTTT CTCGCCGGAA GACAAGGAGG AGGACGGCGA 
GATACGGCGG AGGTTGGTTA TTCACTCAGA GACTTACCTC GTAACACCGA 
CGTTGTTAAT TCCAAAGCTT TTTTACTTCC TCATGCTCGT GCTGGTGTTG 
TTTCTCTTTG TTTATCTGAG AATGATGATG ATGATGATAT TAGACTCGAT 
CCTGATTATA GAAATGTTGA ATTCTTAATC ACTACTGGTC CTGGACCGTC 
TCCGCAGCTC GATGGCGGTA ACATTGTATT CGGAACTGTT CTTGAAGGAT 
TAGATGTAGT GACGAGTATT TCTTCGATTC CGACGTATAA GCCGTCGGAG 
AATATTAAAC AGTTTAACGA TTTTGCGGAG TTTCTTGGAG ACGAGAGAGC 
TCAAAACGCG AGATCTTTGT GGAATAGACC TTTGAAGACG GTTTTCATTA 
GTGGCTGTGG AGAGCTTAAG GTCACTAATC CTTCACTCTC TCCAACTTTG 
CCTTAATTAT CGTATCTTCG TATATATATA TATGTGTGTG TGTCAAATCT 
TGTTTATAAT CATGCTTCTG CTTCTTCTAC TATATGAAAA TGAAATTGTA 
ATTTAATCCT ACTCTGGTGG TTGCTAAAGA TTAGTATAGA GAAGAGCTTA 
TATAATCATA ACATTGAGGT TGTTGTTGTT TGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G35100.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.09999977126231e-18
superfamily Cyclophilin-like 1.3e-24
HMMPanther PPIase_cyclophilin 0
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 0.0000969999663390112
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 0.0000969999663390112
HMMPanther PTHR11071:SF11 0
ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 0
HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.1e-17

See the detailed result >

AT5G35100.1

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G34960.1); Has 4654 Blast hits to 4654 proteins in 798 species: Archae - 9; Bacteria - 741; Metazoa - 1669; Fungi - 839; Plants - 784; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-90-B17 introduced

  • F15950 - Specific phenotypes were NOT observed.
  • F18733 - Specific phenotypes were NOT observed.
  • F19943 - seed::decreased size / seed::decreased length

Mutant lines with disrupted or induced

4 mutant lines found