1. Home
  2. Full-length cDNAs
  3. RAFL09-90-E16

RAFL09-90-E16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06948)

full reading [+] show sequence

Nucleotide sequence: RAFL09-90-E16 - full reading 
GGACAAAAAA AATCAAGAAG AAAAAATGCA GAAGACATTG CTCTCATGTC 
TCATCACGAC GCTCCTCCTA ATCACCGTCG CAGATTCCAT GAAAGACACC 
TCGGTGCGGC TAAAATTAGC GCACAGGGAC ACTCTCTTGC CGAAACCTCT 
CAGCCGCATT GAGGACGTTA TCGGCGCCGA CCAGAAGCGT CATAGTTTGA 
TATCTCGGAA GCGTAACTCC ACAGTAGGAG TGAAAATGGA TTTGGGATCA 
GGGATTGATT ACGGAACGGC GCAGTATTTC ACGGAGATTA GAGTTGGAAC 
TCCGGCGAAG AAGTTCAGAG TGGTGGTTGA TACAGGAAGC GAGCTTACTT 
GGGTGAATTG TAGATACCGT GCGAGAGGCA AAGACAATCG GAGAGTGTTT 
AGAGCTGACG AATCAAAGAG CTTTAAGACC GTTGGATGTT TAACTCAGAC 
TTGTAAAGTT GATCTGATGA ATCTCTTCTC ACTCACTACT TGTCCTACTC 
CTTCCACTCC TTGCTCCTAT GATTACAGAT ATGCAGATGG GTCAGCAGCA 
CAAGGCGTAT TCGCAAAGGA GACTATCACA GTTGGTCTCA CTAATGGTCG 
TATGGCTAGA CTCCCTGGTC ACCTCATTGG TTGTAGTAGT TCCTTTACAG 
GACAGAGCTT CCAAGGAGCC GATGGGGTTC TTGGTTTAGC CTTTAGCGAT 
TTCTCCTTCA CTTCCACAGC CACTAGTCTC TATGGTGCCA AATTTTCATA 
CTGCCTTGTT GACCATCTTT CCAACAAAAA CGTCTCCAAC TATCTCATCT 
TCGGCTCCTC CAGATCCACC AAAACCGCCT TCCGACGAAC CACTCCGCTT 
GATCTCACTC GCATCCCACC CTTCTACGCA ATCAACGTCA TTGGAATCTC 
CCTCGGATAC GACATGCTTG ATATCCCCTC GCAAGTATGG GACGCAACTT 
CCGGTGGTGG GACTATCTTA GACTCTGGAA CCAGCCTCAC GTTATTGGCT 
GACGCCGCGT ACAAACAGGT GGTTACAGGG CTCGCACGCT ACCTTGTTGA 
GTTGAAAAGA GTCAAACCAG AAGGAGTACC AATAGAGTAC TGTTTTAGTT 
TCACTTCCGG ATTTAACGTG AGCAAGTTAC CGCAGCTGAC ATTTCATTTA 
AAAGGCGGTG CACGATTTGA GCCACATCGT AAAAGTTACC TAGTAGATGC 
AGCGCCTGGA GTCAAGTGTT TAGGATTTGT GTCGGCTGGA ACGCCGGCGA 
CTAATGTGAT CGGTAATATA ATGCAGCAGA ATTATTTGTG GGAGTTTGAT 
CTCATGGCCT CAACTTTGTC TTTTGCTCCC TCTGCTTGCA CTTAGCTGTC 
TTGTCCATCT CTCGTGTTTA TTATTATTGA TTTGTTCGAA TATTTATTGT 
TTGCTAGTGA ATGAATAAAA AACATGTTTG TTAGTGAAAA AAAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT3G12700.1 [+] show detail - Eukaryotic aspartyl protease family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Peptidase aspartic, active site 0
FPrintScan Peptidase A1 2.3e-08
FPrintScan Peptidase A1 2.3e-08
FPrintScan Peptidase A1 2.3e-08
Gene3D Peptidase aspartic, catalytic 1.4e-21
Gene3D Peptidase aspartic, catalytic 2.9e-37
HMMPfam Peptidase A1 5.2e-23
HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 2.2e-97
HMMPanther Peptidase A1 2.2e-97
superfamily Peptidase aspartic 3.3e-85

See the detailed result >

AT3G12700.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G25700.1); Has 3537 Blast hits to 3526 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 933; Fungi - 442; Plants - 1963; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-90-E16 introduced

  • F08004 - rosette leaf::desaturated green / stem::desaturated green / cauline leaf::epinastic / stem::present in greater numbers in organism
  • F30215 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found