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RAFL09-90-F14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08995)

full reading [+] show sequence

Nucleotide sequence: RAFL09-90-F14 - full reading 
ATCATCATCA TCATCTCTTT CTTCTTCCAA AAGTCATAAT CATGTCAAAG 
TCTCTAGCTG GATTGGCGGT TTTGGCCGCT CTTTTTATTG CGGTTGATGC 
GTTTAGGCCT TCTGGTTAAC TAATGGTCAC GCTACATTCT ATGGAGGAAG 
TGACGCTTCT GGAACAATGG GTGGAGCTTG TGGTTACGGA GATCTTTACT 
CGGCGGGGTA CGGGACAATG ACGGCGGCGT TAAGCACGGC TCTGTTCAAC 
GACGGAGCTT CTTGCGGAGA ATGCTATAGG ATAACGTGTG ATCACGCGGC 
GGACTCACGG TGGTGCTTGA AAGGAGCTTC TGTGGTTATT ACAGCCACTA 
ACTTTTGCCC ACCAAACTTT GCTTTGCCTA ACAACAACGG TGGTTGGTGC 
AATCCGCCGC TTAAACATTT CGACATGGCA CAACCCGCTT GGGAAAAGAT 
CGGAATTTAC AGAGGAGGAA TCGTTCCCGT CGTTTTCCAA AGAGTAAGCT 
GTTACAAGAA AGGAGGAGTT AGATTCAGAA TAAACGGAAG AGACTACTTC 
GAGCTAGTGA ATATTCAAAA TGTAGGAGGA GCAGGTTCTA TTAAATCTGT 
ATCCATCAAA GGATCAAAGA CTGGTTGGTT AGCCATGTCT CGTAACTGGG 
GAGCTAATTG GCAATCGAAT GCTTATCTAG ATGGTCAAGC TCTCTCTTTC 
TCCATTACCA CTACTGATGG TGCTACTAGA GTCTTTCTCA ATGTTGTTCC 
TTCTTCTTGG TCTTTTGGAC AGATTTATTC TTCCAACGTT CAGTTTTAAG 
TTTTTTTTTT TTGTTTTGTA TGAAATATCA TTGGCAGTGG TCGCGCTTTG 
AGTCTGTTTC TTTTCTCCCT GAGCGACCCG CCCTCTTTGT TTTTTTTATC 
TTATGGTATG ATGGGTCTGT TAATACAAAA GACCCGATAT GATTTGAGGG 
TATATGATTA TATGAAGTGT ATTGTATTTG AATGTTTCAG ACTCGAAAAA 
GATTCTGTAG CAAAAGGAGT TTTAACACAT TTGTACTTGG TTTTGTTTAT 
ATGAAGTTTG TTTTAGTTTT TTAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT1G20190.1 [+] show detail - expansin 11
    E-value: 0; Score: 99.81

 

InterPro Scan Digest

Program Description E-value
ProfileScan Expansin 45, endoglucanase-like 28.378
ProfileScan Pollen allergen/expansin, C-terminal 21.821
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin 5.7e-70
FPrintScan Expansin/Lol pI 7.5e-43
FPrintScan Expansin/Lol pI 7.5e-43
FPrintScan Expansin/Lol pI 7.5e-43
FPrintScan Expansin/Lol pI 7.5e-43
FPrintScan Expansin/Lol pI 7.5e-43
FPrintScan Expansin/Lol pI 7.5e-43
HMMSmart no description 2.7e-55
HMMPfam Pollen allergen/expansin, C-terminal 3.7e-26
HMMPfam Rare lipoprotein A 7.4e-25
Gene3D Pollen allergen, N-terminal 7.3e-38
Gene3D Pollen allergen/expansin, C-terminal 1.7e-11
superfamily Barwin-related endoglucanase 3e-42
superfamily Pollen allergen/expansin, C-terminal 5.9e-33

See the detailed result >

AT1G20190.1

Model type
Protein coding
Short Description
expansin 11
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-90-F14 introduced

  • F17848 - Specific phenotypes were NOT observed.
  • F25351 - stem::increased thickness / stem::abnormal / stem::abnormal
  • F30147 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found