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  3. RAFL09-90-L24

RAFL09-90-L24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09002)

full reading [+] show sequence

Nucleotide sequence: RAFL09-90-L24 - full reading 
GTTTCAAAAT CAGACTACTA TGCTCAGCTC AGCCGCCACC GCCACCTCCG 
TGAGTGCTCG CTCCGGCGAT ATTCTCTGCG GCTTGTTTCG CAAAAAATCC 
GTCGCGCCTT TTCGTTTTAC TCAGCCTGTC TATCGTACGT CGCTGTGTCC 
AAGTTTCGTT GCTGTTCGAG CCATGGCAGA GTCTCAGACT GCTCAGAGGA 
ATCAGCCGCA ATCCTCAGGC TCCTCTGGGG AGAAGCAAGC TTTGATATCT 
CTATCTGACA AGAGGGACTT GGCTTCTCTT GGCAACGGTC TGCAAGAATT 
GGGATACACT ATTGTTTCTA CTGGAGGAAC TGCCTCTACT TTGGAGAATG 
CTGGAGTCTC TGTGACCAAA GTGGAGAAGC TTACTCATTT TCCAGAAATG 
CTTGATGGCC GTGTGAAAAC TTTGCATCCA AACATACATG GTGGTATCCT 
CGCTAGAAGG GATGTGGAGC ATCATATGGA AGCTCTTAAT GAGCATGGGA 
TTGGTACATT TGATGTTGTG GTTGTCAATT TGTACCCGTT CTATGAAAAA 
GTTACTGCTC CAGGTGGGAT CAGTTTTGAG GATGGGATTG AGAACATTGA 
CATTGGTGGC CCTGCTATGA TTAGAGCAGC TGCTAAGAAC CACAAAGACG 
TTCTCATTGT TGTCGATTCA GGAGATTATC AAGCTGTTTT GGAGTATCTC 
AAAGGAGGAC AGAGCGACCA ACAATTCCGC AGAAAACTTG CGTGGAAGGC 
CTTTCAGCAT GTTGCTGCAT ATGATTCTGC GGTTTCAGAA TGGCTATGGA 
AGCAGACTGA AGGAAAAGAG AAGTTCCCTC CCAGCTTTAC AGTTCCGCTT 
GTACTTAAGA GTTCTCTTCG TTACGGTGAA AATCCTCATC AAAAAGCTGC 
ATTTTATGTT GATAAGAGCC TTGCTGAAGT GAATGCCGGT GGTATCGCAA 
CAGCGATTCA GCATCATGGA AAGGAAATGT CATACAACAA CTATCTTGAT 
GCTGACGCTG CATGGAACTG TGTGTCGGAA TTTGAAAACC CAACATGTGT 
AGTCGTGAAG CATACAAATC CTTGTGGTGT GGCCTCTCGT GATGATATTC 
TTGAGGCTTA CCGGCTAGCT GTAAAAGCTG ACCCAGTTAG TGCCTTTGGT 
GGCATTGTAG CTTTCAATGT TGAAGTTGAC GAGGTTCTTG CGAGGGAGAT 
CCGAGAGTTC AGGAGCCCAA CAGACGGGGA AACTAGAATG TTTTATGAAA 
TCGTGGTTGC TCCAAAGTAT ACTGCTAAAG GTCTTGAAGT CCTCAAAGGG 
AAATCAAAAA CTTTGAGGAT CCTCGAAGCT AAAAAGAATG ACCAAGGGAA 
ACTATCGCTC AGACAGGTTG GTGGCGGCTG GTTGGCTCAG GACTCGGACG 
ATTTAACTCC AGAAGACATC AGCTTCAATT CTGTCTCAGA CAAAACTCCG 
ACTGAAAGCG AACTTGCGGA TGCAAAATTT GCCTGGCTCT GCGTTAAGCA 
TGTCAAGAGC AATGCCATTG TGATAGCAAA GAACAATTGT ATGCTGGGGA 
TGGGAAGCGG ACAGCCAAAC CGAGTAGAGA GTCTGAGAAT AGCTTTCAAG 
AAAGCTGGGG AGGAAGCTAA AGGAGCTGCC TTGGCCAGTG ACGCATTCTT 
CCCATTCGCT TGGAAAGATG CGGTGGAAGA GGCGTGCCAG ATGGGAATAG 
GAGTGATAGC AGAACCTGGA GGCAGTATTA GAGACCAAGA CGCTATTGAT 
TGCTGCAAAA AGTATGGAGT CTCTCTGCTC TTCACCAACG TTAGACATTT 
CCGCCATTAA GGACACATCC CTCCAGTTTT GCTCTTATAA ACACATCCAA 
GAGAGTTTCT GAAGAAGAAA ACCCACCAAA CAAAACACAA AGAGTGGGAA 
ATAAAACTGT TGTAACATTA ATTTGGATTG CGTTCGAGTT TATGTATGAT 
TAGAACCTGA GAGCTGTTCC TACTTATAAA TTTGACATTT TTCACCCAAT 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT2G35040.1 [+] show detail - AICARFT/IMPCHase bienzyme family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr AICARFT/IMPCHase bienzyme 1.6e-173
HAMAP PUR9_MF_00139 42.42
HMMPfam AICARFT/IMPCHase bienzyme, transformylase domain 2.1e-138
HMMPfam MGS-like 4.4e-23
Gene3D no description 1.5e-68
Gene3D no description 1.7e-52
superfamily AICARFT/IMPCHase bienzyme, transformylase domain 4.3e-119
superfamily Methylglyoxal synthase-like 5.2e-63
HMMPIR AICARFT/IMPCHase bienzyme 0
HMMPanther AICARFT/IMPCHase bienzyme 3.4e-228
HMMSmart MGS-like 1.5e-47
HMMSmart AICARFT/IMPCHase bienzyme, transformylase domain 1.3e-169

See the detailed result >

AT2G35040.1

Model type
Protein coding
Short Description
AICARFT/IMPCHase bienzyme family protein
Computational Description
AICARFT/IMPCHase bienzyme family protein; FUNCTIONS IN: phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; INVOLVED IN: response to cold, purine nucleotide biosynthetic process; LOCATED IN: stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AICARFT/IMPCHase bienzyme, transformylase domain (InterPro:IPR013982), AICARFT/IMPCHase bienzyme (InterPro:IPR002695), MGS-like (InterPro:IPR011607); Has 10802 Blast hits to 10325 proteins in 2522 species: Archae - 69; Bacteria - 5512; Metazoa - 346; Fungi - 183; Plants - 62; Viruses - 6; Other Eukaryotes - 4624 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-90-L24 introduced

  • F05905 - rosette leaf::abnormal / sporophyte vegetative stage::decreased speed / stem::abnormal / stem internode::decreased length / rosette leaf::dark green / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::increased thickness / stem::abnormal / whole plant::decreased height / whole plant::decreased height / sporophyte vegetative stage::decreased speed / petal::abnormal / fruit::abnormal / fruit::decreased length / stem::abnormal / stem internode::decreased length

Mutant lines with disrupted or induced

6 mutant lines found