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  3. RAFL09-90-M10

RAFL09-90-M10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09003)

full reading [+] show sequence

Nucleotide sequence: RAFL09-90-M10 - full reading 
CTCTTCTTTT TCCTTTCCTC TAACTAAACG AGGAAAACAA GCAGGAGAGG 
GGATTCATGT TCTTTTCTCG CTGATCAATC AGATAGAGAT GCTGAGGTTT 
TTCATTCTTT TCTCCCTTTT CTTACACTCT TCTGTTGCGG CACCCAAGAC 
TCCTGCTGCT GCCGCAGCTG TTCCTGCCAA GAAATGGCTT ACCCTTAACG 
GACAAGAGCC TGCCGTTGTG GCCAGAGGGG GCTTCTCGGG TCTTTTCCCT 
GAGTCAAGCA TCTCTGCAAA CGACTTGGCT ATTGGCACCA GCTCGCCTGG 
CTTCACAATG TTGTGCAACC TTCAGATGAC TAAGGACGGT GTGGGCCTTT 
GCTTGTCAGA TATCAGACTT GACAATGCAA CCACCATCTC CTCGGTCTTC 
CCCAAAGCCC AGAAGACCTA CAAGGTCAAC GGTCAGGACC TCAAGGGCTG 
GTTTGTCATT GATTACGATG CCGACACCAT ATTCAACAAA GTCACTCTGG 
TCCAGAACAT CTTCTCTCGG CCTAGCATCT TCGACGGCCA AATGTCGGTT 
TCTGCAGTGG AGGATGTCCT TGGAACCAAG CCTCCCAAGT TCTGGTTGAG 
CGTTCAGTAC GATGCCTTCT ACATGGAACA CAAGCTGAGC CCAGCCGAGT 
ACCTGAGAAG CTTGCGATTC CGCGGCATTA ATGTCATCTC ATCTCCAGAG 
ATTGGTTTCT TGAAGAGCAT CGGGATGGAC GCGGGCAGGG CCAAGACAAA 
GCTCATATTT GAGTTCAAAG ACCCCGAGGC AGTTGAGCCC ACCACCAACA 
AGAAGTACAG CGAGATTCAG CAGAACCTCG CAGCCATCAA GGCCTTTGCT 
TCAGGCGTTC TTGTGCCCAA AGACTACATT TGGCCCATTG ACTCAGCTAA 
GTACCTTAAG CCCGCCACCA CTTTTGTGGC TGATGCTCAC AAAGCCGGTC 
TAGAGGTCTA TGCTTCAGGG TTTGCCAACG ACTTGCGCAC CAGCTTTAAC 
TACAGCTATG ATCCCTCTGC TGAGTATCTC CAGTTTGTGG ACAATGGCCA 
GTTCTCTGTT GATGGTGTCA TCACCGATTT CCCGCCAACA GCATCACAAT 
CAATCACTTG CTTTTCTCAC CAAAACGGCA ATCTCCCCAA AGCAGGGCAT 
GCATTGGTTA TAACTCACAA TGGAGCAAGC GGAGACTATC CAGGCTGCAC 
TGATCTGGCT TACCAGAAAG CAATCGACGA TGGAGCAGAC ATAATTGACT 
GCTCTGTTCA GATGTCCAAA GACGGAATCG CTTTCTGCCA TGATGCTGCA 
GACCTCTCAG CAAGTACCAC CGCCAGGACT ACTTTCATGT CCCGAGCCAC 
CAGCGTTCCT GAGATCCAGC CTACCAACGG AATCTTCTCT TTTGATCTTA 
CATGGGCCGA GATCCAGTCT GTGAAGCCAC AAATAGAAAA CCCCTTCACT 
GCCACGGGCT TCCAGAGAAA CCCCGCAAAC AAGAACGCCG GGAAGTTCAC 
GACTCTTGCG GACTTCCTTG AGCTCGGCAA AGCAAAGGCA GTCACCGGAG 
TTTTAATCAA CATTCAGAAT GCTGCTTATT TAGCCTCGAA GAAAGGCTTA 
GGAGTCGTAG ACGTAGTCAA GTCTGCTCTT ACAAATTCCA CACTCGACAA 
GCAATCAACC CAGAAGGTTT TGATTCAGTC GGATGACAGT TCAGTTCTAT 
CTAGTTTCGA GGCTGTCCCT CCTTACACAA GAGTCTTGAG TATCGACAAG 
GAGATCGGAG ATGCTCCTAA GACATCCATC GAAGAAATCA AGAAGCATGC 
AGATGCTGTC AATCTCTTGA GAACTTCCCT CATCACCGTC TCCCAAAGCT 
TTGCCACGGG GAAAACTAAT GTGGTAGAGG AAATGCACAA AGCGAATATC 
TCTGTATACG TCTCGGTGCT AAGAAATGAG TACATCGCCA TAGCGTTCGA 
CTACTTCTCT GATCCTACGA TAGAGCTTGC AACATTCATT GCAGGGAGAG 
GCGTTGATGG AGTCATCACG GAGTTCCCTG CCACCGCTAC CAGATACCTA 
AGGAGTCCAT GTTCAGATTT GAACAAAGAC CAGCCCTATG CCATCTTACC 
TGCAGATGCT GGAGCTCTAC TCACCGTGGC AGACAAGGAA GCACAACTAC 
CAGCTATTCC CCCAAACCCA CCTCTTGATG CCAAAGACGT GATTGATCCG 
CCTCTGCCTC CAGTTGCAAA GTTGGCCTCC AATGGAACTG AAGGTGGTCC 
GCCACAAACT CCTCCTCGTT CAGGCACCGT TGCCATTGCT GCTAATCTCA 
GCCTTTCCTT GCTGGCAATG ATGGCTTTGG GACTCCTTTA TACAGCCTAA 
AGAGATTGAT CACACCATAT AACCTCATAT AGGTTGTAAC ATGTTTGCCC 
TCAGCGTTTT CAAACTGACA CAACTTGAGT TATCTATGTT TTACTCATGT 
TAACCAAAAT ATGCATCAAA CAGTGATTTG TTGTTATAGA TCAAAAGCTC 
TACAGAAACT TTCTTTGTTG TCATAGGAAT GTTTTTTTCG GTAAAGATTT 
TGAGTCTTGA TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT5G58050.1 [+] show detail - SHV3-like 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 3.1e-30
Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 2.9e-40
HMMPanther Glycerophosphoryl diester phosphodiesterase 2.5e-53
superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.1e-43
superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 4.4e-36
HMMPfam Glycerophosphoryl diester phosphodiesterase 5.7e-07
HMMPfam Glycerophosphoryl diester phosphodiesterase 5e-28

See the detailed result >

AT5G58050.1

Model type
Protein coding
Short Description
SHV3-like 4
Computational Description
SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-90-M10 introduced

  • F09110 - Specific phenotypes were NOT observed.
  • F09637 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found