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  3. RAFL09-90-P06

RAFL09-90-P06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06954)

full reading [+] show sequence

Nucleotide sequence: RAFL09-90-P06 - full reading 
ACGACACTCG CAACTTCTTC CTTATCGACA CCTACACTCT CCTGCTACAA 
TGGCGACTTT CCTAACAAAT GTTGTTTCAA TCAAACCTAC AATCTTCTCA 
TTCCAGTCCG AATCCTTCAC TCCTTTGCAT ACACGGGTCA ATGTATTCTC 
CTCGAAACCC TTTCCTTCTC TCGCTGGAAC TTTCTCCCGG AGCTCTAGAA 
CGAGATTCAT TCCTTATGCT GTAACGGAGA CGGAAGAAAA ACCCGCCGCT 
TTGGACCCTA GTTCAGAAGC TGCCAGGCGT GTGTATATCG GTAACATACC 
CAGGACGGTG ACCAATGAGC AGCTCACTAA ACTTGTTGAA GAACACGGTG 
CTGTTGAAAA AGTTCAGGTG ATGTATGATA AGTATTCAGG AAGAAGCCGT 
CGATTTGGGT TTGCTACAAT GAAATCAGTT GAAGATGCTA ATGCTGTGGT 
TGAGAAATTG AATGGCAATA CCGTTGAAGG GCGTGAGATA AAGGTTAACA 
TTACAGAGAA ACCTATAGCA TCATCACCTG ATTTATCAGT TCTTCAGTCT 
GAGGATTCAG CATTTGTAGA TAGCCCTTAC AAAGTGTATG TTGGGAATCT 
AGCAAAGACT GTTACAAAAG AGATGCTTGA GAATTTGTTT TCTGAGAAAG 
GGAAAGTAGT AAGTGCTAAG GTTTCAAGAG TACCTGGAAC TTCCAAATCC 
ACCGGGTTTG GATTCGTTAC GTTTTCTTCT GAAGAAGATG TGGAAGCAGC 
CATTGTTGCT CTTAACAATT CGTTGCTGGA AGGACAGAAG ATTCGGGTGA 
ATAAGGCTTA GCCTATTGGA TCATAAAGAA TGTGAAAAGA ATCGCTTTGA 
AGAGTTTTTG TAATGCAAAT CATTAGAGCT TAGTGTATCA TCTTGTATTC 
ATTCTAAGTT GAAAATGAAA CCATATCTTT TCAAAAGCTT ATAGTTGTGG 
TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G52150.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 9.1e-85
HMMPanther RNA-BINDING PROTEIN 9.1e-85
HMMPfam RNA recognition motif, RNP-1 1e-18
HMMPfam RNA recognition motif, RNP-1 5.5e-21
HMMSmart RNA recognition motif, RNP-1 4.7e-24
HMMSmart RNA recognition motif, RNP-1 9.5e-26
superfamily RNA-binding domain, RBD 4.8e-23
superfamily RNA-binding domain, RBD 9.3e-23
Gene3D Nucleotide-binding, alpha-beta plait 1.5e-21
Gene3D Nucleotide-binding, alpha-beta plait 1.5e-23
ProfileScan RNA recognition motif, RNP-1 18.308
ProfileScan RNA recognition motif, RNP-1 18.973

See the detailed result >

AT3G52150.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 33 (TAIR:AT3G52380.1); Has 994423 Blast hits to 498842 proteins in 22080 species: Archae - 21562; Bacteria - 603611; Metazoa - 187119; Fungi - 27426; Plants - 59617; Viruses - 70898; Other Eukaryotes - 24190 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-90-P06 introduced

  • F01719 - Specific phenotypes were NOT observed.
  • F12004 - Specific phenotypes were NOT observed.
  • F13111 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::abnormal / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem::abnormal
  • F13818 - Specific phenotypes were NOT observed.
  • F15112 - Specific phenotypes were NOT observed.
  • F16136_76 - Specific phenotypes were NOT observed.
  • F16307 - Specific phenotypes were NOT observed.
  • F16619 - Specific phenotypes were NOT observed.
  • F17307 - Specific phenotypes were NOT observed.
  • F17308 - Specific phenotypes were NOT observed.
  • F17318 - Specific phenotypes were NOT observed.
  • F17319 - Specific phenotypes were NOT observed.
  • F17321 - Specific phenotypes were NOT observed.
  • F17519 - Specific phenotypes were NOT observed.
  • F17544 - seed::increased size / seed::increased length
  • F17722 - Specific phenotypes were NOT observed.
  • F17724 - Specific phenotypes were NOT observed.
  • F17730 - Specific phenotypes were NOT observed.
  • F18142 - Specific phenotypes were NOT observed.
  • F18449 - stem::abnormal
  • F18946 - Specific phenotypes were NOT observed.
  • F19818 - Specific phenotypes were NOT observed.
  • F20544 - seed::increased size / seed::increased length
  • F27241 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

28 mutant lines found