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  3. RAFL09-91-F19

RAFL09-91-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09013)

full reading [+] show sequence

Nucleotide sequence: RAFL09-91-F19 - full reading 
ACCGTCCTCA TGGCGTTCCT CGCTCTCCCG CATTTCCTGC ATCTCCGTCT 
CCGGCGGAAT GATCGGAAAA ACCGATGCAA ATGTTGTTTG TCTTCGGCAA 
CGAATGAAGG TTCCACGGCG GTTGTGTGGT TTAAACATGA CCTACGTGTT 
GATGATCATC CTGGCCTCCT CGCTGCGTCT AAGCACAGAG CCGTCATACC 
TCTCTACGTC CTCGATCGTC GCATTCTATC GAGATACACA ACGGACACTT 
TAGAGCTAGC TATTATAGCA TTGGAAGATT TGAGAAAAAC CTTGAAGAAG 
CAAGGATCAA ATCTTATGCT CAGATATGGG AATGCAGAGA ATGTCATTGA 
AGATCTTGTC AAAGAGGTGC GAGCTCCTTT TGTCTTTGTG GAAGAAGAGG 
TAGAATACCA TCTGTGTGAG GTTTTAGACG CTGTAAAGAA TAAATTGGAA 
GGTGTTTCTT TATCTGGAGA ATCACCGAGG ATTGTTGCTT GGCGTACTCC 
TTTTTACGAG AGCCAAAATT TGACAGATCT ACCACAATCT TGGGAGGAGT 
TTAAGAAACT GAAGCTGCCT CTCACTTTGC CAGTTCCTGC AGCAAAATTT 
TCATCTCCAG GAAGTGAATT GCAGTGGGGT TCTGTGCCAA CGCTCGATGA 
CCTGAAGGAC TATTTGAAGG AAAGCTTATG GGAAATAGAA AATAGTTGGA 
GGGAAATGGC ACAGGCATCT GCTGAAAGAG TATTAATGGA AAGGCTTGGT 
AACTTGAAGG AAAGCAGTAT GGAGCCAATT GTTGATGGAA GTTTAGGGAA 
GAAGGTTGAT AACTCTGTTT TTGTCACAAG TAAAAGAGAT ACTGTTGGAG 
GTGGAAATGA GGTTGTACTG AATGCTCTAG CAGGATACTT GAGGTACTTG 
GAGGGTACAA GTCGAGATGA CTGGCAAGAG TACGTGGTTA TTCTTAATTC 
TGGCGTTATT GTGCTTCCCA GATGCTTCCA TATGAAAGTG GTTATTATGG 
AATGAATCTG GTATATTTTA TATCTTGTTG AAGAGTGATG GGCGTTGGTT 
TTGATGTTGA CCAGGGTCCA TGCGAGACTT CGTGATGCCG AGACTAGGCC 
CGGAGCTTCA TTTTTCAAAC TTTTTGGACC TGTCCTCTGT CTTGGTATCG 
TATCCAGAAG AAGTGTCCAC TATGAAGCAA TCGAGTATGA AAAAGAAAGG 
AATGCTGGAT TTATTTCTCC TTTTGGATAT TCAGCTGCCA CAGTGTCTGC 
TGCAACTGAT GCTGTATGCT CTATGGAGTG GTATTATCTC CTGGCTCTAA 
GTAGAGAGAG GATTGATGAA AAAAGGCACG CTATAAGGAT TTGGAGATGG 
AAGGGATATC TTATTCAGTA CACAGTGGTT GGTAATGAAG GGCCTGCCGT 
TCTTCTTGTG CATGGCTTTG GTGCTTTTCT AGAGCATTAC CGCGATAATG 
TAGACAACAT CGTAAATAGC AAAAATCGAG TATGGACCAT CACAGTCTTG 
GGTTTTGGAA AATCAGAGAA GCCAAATATC ATTTACACCG AGCTTTTGTG 
GGCTGAATTA CTGCGGGATT TCATGGCTGA AGTAGTTGGG GAACCAGCAC 
ATTGCGTAGG GAATTCAATC GGTGGGTATT TCGTTGCATT AATGGCCTTT 
CTTTGGCCGG CGTTGGTTAA GTCCGTTGTC CTTGTTAACA GTGCCGGCAA 
TGTGGTACCT GGATACTCTC CTCTCCCAAT CTCTAGAGAA AGGCGAGTTC 
CATTTGGTGC ACAATTTGGT TCTCGACTTC TTCTCTTTTT CCTACAACTC 
AATGTCAAAA AGCTATTAAA GGATTGTTAT CCAGTTAAAC CTGAGAGAGC 
TGATGACTTT CTTGTCACTG AAATGCTAAG AGCATCTCGA GACCCTGGTG 
TGGTTATGGT CCTGGAAAGT ATCTTTGGCT TTGATCTTTC GCTTCCTTTG 
AATTACCTAC TCAAAGGGTT TGAGGAAAAC TCTAGTAATA CAGGGAATGG 
AAGATCCCAT ATCGGATCCG CAGAAGAAAG TAGCCTTACT GAAGGAGCTT 
TGTCCAGCGA TGGTGATAAA GAAAGTTAAA GCAGGTCACT GTCCCCACGA 
TGAAATCTCA GAAGAGGTAA ATCCGATTAT CTGCGAATGG ATAGTGAAGG 
TCACTAATGA TGATCGAGAA CTAAAAGCCT CATCATCCCA GCAACTTTAC 
CACAGTAATA AACAAAACTA AGGATTTGGT CATCAGAAAG CAGTTTTTGA 
AATGGTATAG TTTGGTTGTG TCAACAAGAC ATCGTCATAG ATGTCATCAA 
TCCAAATTGA AGAAACATGA CCATGTTATA ACTCATTTAA AAGGAACCGT 
CATTTTTCTT TCTGACTAGT ATATATATTG TTTATTTATC TTTTGAAGAT 
ATGTACAAGT TTTCGTAAGC CTGAATCCGT AATGTCACTA TTTAATTATT 
TGGACGTTAT GTCACAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT4G25290.1 [+] show detail - DNA photolyases;DNA photolyases
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily DNA photolyase, N-terminal 1.1e-31
superfamily alpha/beta-Hydrolases 1.1e-29
superfamily alpha/beta-Hydrolases 1.1e-08
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 4.7e-22
Gene3D no description 3.9e-27
Gene3D no description 0.00018
HMMPanther HYDROLASE 5.8e-154
HMMPanther ALPHA/BETA HYDROLASE RELATED 5.8e-154
HMMPanther HYDROLASE 2e-41
HMMPanther ALPHA/BETA HYDROLASE RELATED 2e-41
HMMPanther CRYPTOCHROME 4.7e-18
HMMPfam DNA photolyase, N-terminal 2.2e-23
HMMPfam Alpha/beta hydrolase fold-1 3.6e-06

See the detailed result >

AT4G25290.1

Model type
Protein coding
Short Description
DNA photolyases;DNA photolyases
Computational Description
DNA photolyases;DNA photolyases; FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.1); Has 6717 Blast hits to 6715 proteins in 1229 species: Archae - 120; Bacteria - 4210; Metazoa - 285; Fungi - 40; Plants - 525; Viruses - 0; Other Eukaryotes - 1537 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-91-F19 introduced

  • F19532 - seed::increased size / seed::increased length
  • F25421 - seed::increased size
  • F29142 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found