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  3. RAFL09-91-G15

RAFL09-91-G15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06955)

full reading [+] show sequence

Nucleotide sequence: RAFL09-91-G15 - full reading 
CAGATCTTCC TTTACTACTT CTTCTTCTCT CTCTCTCCTT TGGTTTGCTC 
TGTTTTTATA TATTTCTATA AAATCAAAGT AAAAACCAAA TCCATGGGGT 
TCTTCGCTTC ACAATCCCAA CGCACCTCTC TCTCTATCTC TCACTTCTTC 
TTCTTCCTCT CCCTCTTCAC CAATGCCACG TAACCCTAGA TTCTGCTTCT 
TCCTCTTCCT TCTTTTTCAC TCCTCTCTTT TCTTCTCCAT CCCCTGTTTT 
TCCATAGACG AACAGGGTCT AGCTCTCCTC TCATGGAAAT CTCAGTTGAA 
CATCTCCGGA GACGCTTTAT CTTCTTGGAA AGCCTCCGAA TCGAATCCTT 
GTCAATGGGT GGGAATCAAA TGCAACGAAA GAGGTCAAGT CTCGGAGATA 
CAACTCCAAG TCATGGATTT TCAAGGTCCG TTACCGGCGA CGAATCTCCG 
ACAGATAAAG TCTCTGACTT TGCTCAGCTT AACCTCCGTG AATCTCACTG 
GTTCAATCCC TAAGGAGCTT GGAGACTTGT CGGAGCTAGA AGTTCTTGAT 
TTAGCTGATA ATTCTCTCTC TGGTGAAATC CCTGTGGATA TCTTCAAGCT 
CAAGAAACTA AAGATTCTGT CTCTCAACAC AAATAATCTC GAAGGTGTGA 
TTCCATCGGA GTTAGGGAAT CTCGTTAACC TCATCGAGCT CACTCTCTTC 
GACAATAAAC TCGCCGGAGA GATTCCTAGA ACCATCGGAG AACTCAAGAA 
TCTAGAAATC TTCCGTGCAG GTGGTAACAA GAATCTCAGA GGAGAGCTTC 
CTTGGGAGAT TGGTAACTGC GAGAGTCTTG TGACTTTAGG TCTCGCCGAA 
ACAAGTCTCT CCGGTAGACT TCCGGCGTCG ATCGGAAACC TGAAAAAGGT 
TCAGACAATA GCTCTTTACA CGTCACTCTT GTCTGGTCCA ATCCCTGATG 
AGATTGGAAA CTGCACAGAG CTTCAAAACC TCTACTTGTA CCAAAACTCA 
ATCTCTGGAT CGATTCCTGT ATCAATGGGA CGTCTCAAGA AGCTTCAAAG 
TCTTCTCTTA TGGCAAAACA ATCTCGTCGG AAAGATCCCT ACCGAGCTAG 
GCACCTGTCC GGAGCTTTTC CTCGTCGATT TATCGGAAAA TCTCCTCACC 
GGAAACATCC CAAGAAGCTT CGGAAACCTT CCAAATCTCC AAGAGCTTCA 
GCTAAGTGTT AACCAGCTCT CCGGTACAAT CCCTGAAGAA CTCGCGAATT 
GCACGAAGTT GACGCATTTA GAGATCGATA ACAACCAAAT CTCCGGCGAG 
ATTCCGCCGT TGATCGGGAA ATTAACAAGC TTGACGATGT TCTTTGCGTG 
GCAGAATCAG TTAACCGGAA TAATTCCAGA GTCTCTTTCT CAATGTCAAG 
AGCTTCAAGC GATTGATCTC TCCTACAACA ATCTCTCTGG TTCGATACCT 
AATGGAATCT TTGAGATTCG AAACCTCACG AAGCTTCTTC TTCTCTCTAA 
CTACTTATCT GGATTCATAC CACCGGATAT TGGAAACTGC ACGAATCTTT 
ACCGGTTAAG ACTCAACGGT AACAGACTCG CGGGAAATAT TCCGGCGGAG 
ATTGGGAATC TGAAAAATCT CAACTTCATC GATATAAGTG AGAATCGTCT 
CATCGGAAAC ATTCCTCCGG AGATCTCCGG TTGTACAAGT CTCGAATTCG 
TCGATCTACA TTCAAACGGT TTAACCGGTG GTTTACCCGG TACACTTCCG 
AAGAGCTTAC AATTCATTGA TTTATCCGAT AATTCATTAA CCGGTTCTCT 
ACCAACCGGA ATCGGATCGT TAACCGAACT CACGAAGCTC AATCTCGCGA 
AGAATCGTTT CTCCGGCGAA ATCCCTCGAG AGATATCTTC CTGTCGGAGT 
CTTCAGCTTC TCAACCTCGG CGACAATGGC TTCACCGGAG AAATCCCTAA 
CGAGTTAGGA CGGATCCCGT CTCTTGCGAT CTCTCTAAAT CTCAGCTGCA 
ATCACTTCAC CGGAGAGATC CCGTCGAGAT TCTCTAGCCT CACTAATCTC 
GGAACCCTCG ATGTCTCTCA CAACAAACTC GCCGGAAACC TAAACGTCTT 
AGCTGATCTA CAGAACCTCG TCTCACTCAA CATCTCCTTC AACGAATTCT 
CAGGCGAGTT ACCAAATACT CTGTTTTTCA GGAAACTTCC ACTCTCTGTT 
CTTGAATCAA ACAAAGGGCT ATTTATTTCG ACCCGACCCG AGAATGGGAT 
CCAAACCCGA CACCGTTCGG CTGTCAAAGT AACCATGTCG ATCCTCGTAG 
CAGCAAGCGT CGTTCTTGTT CTCATGGCGG TTTACACTCT CGTCAAAGCT 
CAACGAATCA CCGGAAAACA AGAGGAGTTA GATTCTTGGG AAGTGACTCT 
TTATCAGAAA CTCGATTTCT CCATCGACGA CATCGTCAAG AACTTAACTT 
CAGCTAACGT GATCGGAACT GGAAGCTCCG GTGTAGTTTA CAGAGTCACA 
ATCCCGTCCG GTGAAACTTT AGCTGTGAAG AAAATGTGGT CAAAGGAAGA 
AAACAGAGCG TTTAACTCAG AGATCAACAC TCTTGGATCG ATTCGACATA 
GGAACATAAT CCGTCTTTTG GGTTGGTGTT CGAATCGGAA TCTGAAGCTT 
TTGTTCTATG ATTATCTTCC TAACGGAAGT TTAAGCTCTC TGCTTCACGG 
TGCCGGTAAA GGAAGTGGAG GAGCTGATTG GGAAGCACGT TACGACGTCG 
TTTTAGGCGT TGCACATGCA CTAGCTTATC TTCATCATGA TTGTCTTCCT 
CCGATTCTAC ACGGTGACGT TAAAGCTATG AATGTCTTAT TGGGTTCCCG 
CTTCGAATCT TACTTAGCCG ATTTCGGTTT AGCAAAAATC GTCTCCGGTG 
AGGGAGTTAC CGATGGAGAT TCGTCTAAAT TGAGTAACCG GCCTCCGTTA 
GCCGGTTCTT ATGGTTACAT GGCTCCAGGT AAAATTCAAA ATTTCGATTT 
TAACGTTATA AACTTATCAA TTTCGAAATA TTAACTTTAT AACGGATTTT 
ATTTGTTTTG TTACAGAACA TGCTTCGATG CAACATATAA CAGAAAAGAG 
TGATGTGTAT AGCTATGGAG TGGTGCTACT AGAAGTTTTA ACCGGGAAGC 
ATCCATTGGA CCCGGATCTA CCCGGAGGTG CTCATTTGGT TCAATGGGTG 
AGAGATCATT TAGCCGGAAA GAAAGATCCT AGAGAAATTC TTGACCCGAG 
ACTCCGCGGG CGGGCAGATC CTATAATGCA TGAGATGCTA CAAACTCTAG 
CGGTCTCGTT CCTTTGTGTG AGCAACAAGG CATCCGATCG GCCTATGATG 
AAAGACATTG TGGCAATGCT TAAAGAGATT AGGCAGTTTG ATATGGATAG 
ATCGGAATCC GATATGATAA AAGGCGGAAA ATGCGAAAAA TGGCAGCCGC 
AACCGTTACC ACCGGAGAAA ATTGTCAGTA CTCCTCGAGG TTCATCTAAT 
TGTTCGTTTG CTTACTCGGA TGAATCCGTA TAAAAAATTT TACAGGAGTT 
CGATTAGGGT GATGACATTT ATAAAATGTG TGTGTGAATA TTTATTTGTT 
GTCGATGATT TGTTAGAATC AGGGAAAGAA AGATCTAAGC TTAGCTTATT 
GTTTTGGTTT GTGAGTTTTA ATTTTATTTT TTCTTGCAAA CGAGTTGAAG 
AAAGAATGTA TTGTAAAATA ATTTCAATAG CTTGAAGTGG TTTATTTTAT 
TAAAAAAATA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT5G56040.1 [+] show detail - Leucine-rich receptor-like protein kinase family protein
    E-value: 0; Score: 99.97

 

InterPro Scan Digest

Program Description E-value
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
ProfileScan Protein kinase, catalytic domain 26.732
Gene3D no description 3.7e-61
Gene3D no description 9.5e-60
Gene3D no description 5.5e-33
Gene3D no description 8.7e-14
Gene3D no description 6.2e-20
Gene3D no description 1.9e-09
HMMSmart Leucine-rich repeat, typical subtype 5
HMMSmart Leucine-rich repeat, typical subtype 100
HMMSmart Leucine-rich repeat, typical subtype 81
HMMSmart Leucine-rich repeat, typical subtype 9.9
HMMSmart Leucine-rich repeat, typical subtype 380
HMMSmart Leucine-rich repeat, typical subtype 140
HMMSmart Leucine-rich repeat, typical subtype 25
HMMSmart Leucine-rich repeat, typical subtype 380
HMMSmart Leucine-rich repeat, typical subtype 80
HMMSmart Serine/threonine-protein kinase domain 1.4e-07
HMMSmart Tyrosine-protein kinase, catalytic domain 8.2e-07
HMMPanther LRR RECEPTOR-LIKE KINASE 3.4e-268
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.4e-268
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3e-35
HMMPfam Leucine-rich repeat 0.22
HMMPfam Leucine-rich repeat 0.6
HMMPfam Leucine-rich repeat 0.87
HMMPfam Leucine-rich repeat 0.18
HMMPfam Leucine-rich repeat 0.14
HMMPfam Leucine-rich repeat 0.23
HMMPfam Serine/threonine-protein kinase-like domain 1.2e-28
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 7.8e-12
HMMPfam Serine-threonine/tyrosine-protein kinase 4e-07
superfamily RNI-like 1.5e-67
superfamily RNI-like 4.2e-58
superfamily Protein kinase-like domain 1e-44
superfamily Protein kinase-like domain 3e-11
FPrintScan Toll-like receptor, leucine rich repeat-containing 5.8e-05
FPrintScan Toll-like receptor, leucine rich repeat-containing 5.8e-05

See the detailed result >

AT5G56040.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-91-G15 introduced

  • F10742 - Specific phenotypes were NOT observed.
  • F15015 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found