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  3. RAFL09-91-I19

RAFL09-91-I19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09016)

full reading [+] show sequence

Nucleotide sequence: RAFL09-91-I19 - full reading 
GGCGAACGAA ACCCTAATCA TCACTTCTCC ACTTTTGTTC GTCATCCTCT 
TCAAAATTTC TTCAATTTGA TTCTGCAATT TCCTTTATCT CTCTCTGGAT 
TAAGTTTCAA TTTCTTCTTA GCCCGCCATG GATGCTCAGC GAGCTCTGTT 
GGACGAACTA ATGGGCGCAG CTCGTAATCT GACAGACGAA GAGAGAAGAG 
GGTTCAAGGA GGTTAAGTGG GACGATAGAG AAGTATGTGC ATTCTATATG 
GTTCGATTTT GTCCTCATGA CCTCTTTGTT AACACGAAAA GCGATCTTGG 
AGCATGCTCG AGAATTCATG ATCCAAAGTT GAAAGAAAGC TTCGAGAACT 
CTCCGAGGCA TGATTCCTAT GTGCCTAAAT TCGAGGCTGA GCTTGCACAG 
TTTTGCGAGA AGTTGGTGAA TGATCTTGAT AGGAAAGTTA GGCGTGGGCG 
AGAACGTCTT GCACAAGAAG TTGAACCGGT TCCACCACCT TCTCTATCAG 
CAGAGAAAGC TGAACAATTG TCTGTCTTGG AGGAGAAAGT TAAGAACCTT 
TTGGAACAAG TGGAAGCACT TGGTGAAGAA GGCAAAGTGG ATGAAGCTGA 
AGCGCTAATG AGGAAGGTGG AAGGGCTAAA TGCTGAGAAG ACAGTGTTGT 
TACAACGACC AACTGACAAG GTACTCGCGA TGGCTCAGGA GAAGAAGATG 
GCATTGTGTG AGGTTTGTGG TTCATTTCTT GTGGCTAATG ATGCAGTAGA 
AAGAACACAG TCTCATGTCA CTGGAAAGCA ACATGTTGGC TATGGCTTGG 
TTCGGGATTT TATTGCTGAA CAAAAAGCTG CTAAAGATAA AGGAAAGGAA 
GAAGAAAGAC TAGTAAGAGG AAAAGAAGCA GATGATAAGA GGAAACCAAG 
GGAGAAGGAA AGCGAGAGTA AGAGGAGTGG TTCTAGTGAT AGAGAAAGAT 
ATCGTGATCG AGACCGAAAC AGAGATGGTG ACAGACACAG AGACCGTGGT 
AGAGATTATA GAAAGCCTTA TGACAGGAGA TCGAGGAGTG GGAGAGAGGA 
CCGAGATCGA AGCAGGTCAC GATCTCCTCA TGGAAGGTCT GGTCACAGAA 
GGGTGTCGAG AAGCCCCATT CGCCAATACT AGTTTGAGAC CCTCGTGGAA 
GGTCTGGTCA CGAAAGGGTG TTGAGAAGCA CCATTTGCCA GTACTAGTTT 
GAGATAAGGT GTTGTCACTA TGTCTTGGGG CCAGGAACTT TGCAAATTAA 
TGAGGTAGAC AATGTGATAC CCCCTTTGGT TTCATAAGCA TGTGTTGTCT 
TTTGGAACTT CCTTGTTAAA ATTTATGGAT AAAATTTGTC TTTCTACCGG 
ATCACAGCTA TTCTAAGAGT TTGAGACCTT ACCGATTCTC CTTCATCGGT 
TATTTGTTAA GAGGTCAAAA GCGTTGAGGT AGGTATTACC CGTAAAACTT 
TTACATTTTC ATTGTATTTC TCGATACTTG AGATGCTATA GCGTCATTTT 
ATTTTATTTT TGTCTTTTGG TACACCATTT CAAGTTTGAT ATACCTTTCT 
GATTTAAAAA AAAAAACAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT5G51410.1 [+] show detail - LUC7 N_terminus domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
HMMPfam LUC7 related 1.2e-86
HMMPanther CISPLATIN RESISTANCE-ASSOCIATED OVEREXPRESSED 3.5e-123
HMMPanther LUC7 related 3.5e-123

See the detailed result >

AT5G51410.1

Model type
Protein coding
Short Description
LUC7 N_terminus domain-containing protein
Computational Description
LUC7 N_terminus domain-containing protein; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1); Has 11347 Blast hits to 6019 proteins in 331 species: Archae - 9; Bacteria - 137; Metazoa - 6515; Fungi - 1614; Plants - 1008; Viruses - 20; Other Eukaryotes - 2044 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-91-I19 introduced

  • F10307 - Specific phenotypes were NOT observed.
  • F12503 - Specific phenotypes were NOT observed.
  • F16238 - seed::increased size / seed::increased length
  • F29832 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found