1. Home
  2. Full-length cDNAs
  3. RAFL09-91-J23

RAFL09-91-J23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09018)

full reading [+] show sequence

Nucleotide sequence: RAFL09-91-J23 - full reading 
ACAAGCTTCT TCGTCTCCTT CACAGAGCTT TATTCTTGCC CTAGAGATAC 
CGAGCGGGAG ATTCCAGATT GAGAGCAGCT TCGAGTCTCT CTCTCCTCGC 
CGTTCCTTTT CGCTTCTTCA AGTTTCGTTG CCAGAGAGAT TCTAGGTATT 
GAAGTTATAG AATGGACTTT GATGAGTATG AGTACTTAGA GAAGACAGTT 
GAAAATCCTC ACCTGGAGAA TGAAGTTGGT AATGGTGGTG GTGATGAGAA 
AGTCAAATCT GAAGGGAAAG AGAGGAGTAG GAGCTCAAGG CATAGGGGTG 
ACAAGAAGAA GGAGAGGGAT GAAGATGAGG ATGGTCGGCG TTCTAAGCGG 
TCGAGATCGC ATCACCGTTC ACGTTCTAGG GACAGAGAGA GGGATAGGCA 
TAGAAGTAGC AGGGAGCACA GAGATAGAGA TCGTGAAAAG GATGTAGATA 
AAGAAGAAAG AAATGAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT2G16940.2 [+] show detail - Splicing factor, CC1-like
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G16940.2

Model type
Protein coding
Short Description
Splicing factor, CC1-like
Computational Description
Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT5G09880.1).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-91-J23 introduced

  • F07219 - Specific phenotypes were NOT observed.
  • F07436 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found