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  3. RAFL09-91-M24

RAFL09-91-M24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17905)

full reading [+] show sequence

Nucleotide sequence: RAFL09-91-M24 - full reading 
CCTGAAGACA AAGCGCAGAA AATGGTGGGA GCGACTGTAG TTAGTAAATG 
GACTCCCCTA TGTGTGGCTT CGCCGCCGGA GAGAAACTCG GCAAGTCTCA 
ATCCACACTG TTCTCCAGCC AGGGTTAATT TTAGAACAGC GTTGGCCGCA 
TTTCGTCCTC AGTTCCGTCT TTTCTCTCGC AATTCCGCGT CTCGCCGCCG 
TCTTCGCGCT TCCAGCTCCG CCGAATCGGG AATCTTCCTT CCTCACCTTG 
TAGCTTCTAT GGAGGACGTT GAGGAGACTT ACATTATGGT GAAACCTGAT 
GGCATACAAC GAGGCCTTGT AGGAGAAATC ATTTCTCGCT TTGAGAAAAA 
GGGGTTTAAA CTTATTGGGC TCAAGATGTT TCAGTGCCCA AAAGAATTGG 
CTGAGGAGCA TTATAAGGAT CTTAGTGCTA AATCATTCTT TCCTAACCTG 
ATTGAGTACA TCACTTCAGG TCCAGTTGTG TGTATGGCTT GGGAAGGTGT 
TGGTGTTGTT GCTTCAGCCA GGAAGCTAAT AGGGAAAACA GATCCGCTTC 
AAGCTGAACC TGGTACTATA AGAGGAGATC TTGCTGTGCA AACCGGAAGG 
AACATTGTGC ATGGTAGTGA CAGCCCTGAA AACGGCAAGC GTGAGATTGG 
TCTGTGGTTC AAAGAGGGCG AGCTATGCAA GTGGGATTCG GCTCTAGCTA 
CATGGCTAAG GGAGTGATCC TTGAGAAGAC AGAGTCAATT ATAATGGTGT 
CCTTACTTGT TTTCTTGTTA CCGATGATGA GCTTTGGTGT TTTGTTCCTG 
ATTTTGGGCG GCAATATAAT ATAACTGCCA ATCTATGGCT TGATTCTTCT 
CATATCTGTG ATCACTTGTC ATGTAATCAA AACTAGTTAC ACAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT5G63310.1 [+] show detail - nucleoside diphosphate kinase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Nucleoside diphosphate kinase, core 4.6e-86
superfamily Nucleoside diphosphate kinase, core 6.2e-57
HMMPfam Nucleoside diphosphate kinase, core 1.3e-54
HMMPanther Nucleoside diphosphate kinase, core 7.3e-31
PatternScan Nucleoside diphosphate kinase, core 0
FPrintScan Nucleoside diphosphate kinase, core 1.1e-49
FPrintScan Nucleoside diphosphate kinase, core 1.1e-49
FPrintScan Nucleoside diphosphate kinase, core 1.1e-49
FPrintScan Nucleoside diphosphate kinase, core 1.1e-49
FPrintScan Nucleoside diphosphate kinase, core 1.1e-49
Gene3D Nucleoside diphosphate kinase, core 3e-55
HAMAP Nucleoside diphosphate kinase, core 33.18

See the detailed result >

AT5G63310.1

Model type
Protein coding
Short Description
nucleoside diphosphate kinase 2
Curator Summary
Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.
Computational Description
nucleoside diphosphate kinase 2 (NDPK2); FUNCTIONS IN: nucleoside diphosphate kinase activity, protein binding, ATP binding; INVOLVED IN: response to UV, auxin mediated signaling pathway, response to hydrogen peroxide, red, far-red light phototransduction; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G09320.1); Has 9088 Blast hits to 8922 proteins in 2598 species: Archae - 291; Bacteria - 4641; Metazoa - 1094; Fungi - 170; Plants - 375; Viruses - 117; Other Eukaryotes - 2400 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-91-M24 introduced

  • F04346 - Specific phenotypes were NOT observed.
  • F10427 - Specific phenotypes were NOT observed.
  • F13249 - rosette leaf::dark green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::increased width / stem::abnormal / cauline leaf::epinastic / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found