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  3. RAFL09-91-P07

RAFL09-91-P07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09023)

full reading [+] show sequence

Nucleotide sequence: RAFL09-91-P07 - full reading 
AAGAGGCGTG ACTTTAAAAA TCTGTAAAAA AGCAAATCCG AAGAAAGAGA 
GAGAGAGAAG GTGATTTTGA AATTTCAGAT AACGCAGAAT TTTTTTATTC 
TCGCCGGAGT TTTCTCCTCC CACCGTCTCT GATTCTCGTC GCCGCCGTAC 
ACAGTTGTTG TTCTCTGCCG TTTCTGCAAG ATGATTGGAT CGTTTCTTAC 
AAGAGGATTG GTGATGGTGT TGGGCTATGC TTACCCTGCG TATGAATGTT 
ACAAGACTGT TGAAAAGAAT AGGCCTGAAA TCGAGCAACT TCGCTTTTGG 
TGTCAGTACT GGATATTGGT TGCTTGCTTG ACAGTTTTTG AGAGAGTTGG 
TGATGCGTTT GTTTCATGGG TTCCGATGTA CAGTGAAGCT AAGTTGGCAT 
TCTTCATATA CCTGTGGTAT CCTAAAACCA GGGGTACTAC ATATGTCTAC 
GAGTCCTTCT TTAGGCCATA TCTCTCACAG CATGAGAATG ACATAGACCA 
TAGTTTGCTC GAGCTAAGGA CTAGAGCAGG AGATATGGCT GTTATATACT 
GGCAACGAGT TGCAAGTTAT GGTCAGACCA GAATCCTTGA GATTTTGCAG 
TATGTTGCTG CACAATCAAC TCCAAGACCG CAGCCACCTC AGAAACGTGG 
AGGTAGAGCT AATCAAGCTC CTGCGAAGCC TAAGAAAGCC CCTGTTCCCC 
CAATCAGAAC CTGAAGAAGT ATCATTGTCC TCGTCTTCTA GCTCATCTTC 
AAGTGAAAAT GAAGGTAATG AGCCAACCCG TAAAGTATCA GGCCCGTCAA 
GACCTAGACC AACAGTGACA TCTGTACCAG CTGCAGATCC CAAAAACGCG 
GGTACCACTC AGATAGCACA GAAATCAGTA GCTTCCCCAA TTGTGAACCC 
ACCACAGTCA ACCACCCAAG TGGAACCAAT GCAGATAGAA GAAGTGGAAG 
GAGAGGCAGA ATCAGGGAAT GAAAATCCCA ACCCGGAAGG TCCAAAGGAG 
ACAGTGATGG AGGAGACAAT CAGGATGACT CGTGGGAGGT TGAGGAAGAC 
GCGTTCGGAA GAAAGCCGTT GAAAGAAGAA GAAGAAGCTC AATCCAAAAA 
ATTGTTACTT ACTTGCATAA CAGTGGTCTC TCTTCTCTCT TACTCTATGT 
TTCCTGCTTC TAGAATTACG TTGACAGGAA CTAACAACTA GTGGGAATGG 
TTGTATGAAA AGTTAATCTG TTGGTTTTGT TCTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G42560.1 [+] show detail - Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
HMMPfam TB2/DP1/HVA22 related protein 7.5e-32
HMMPanther HVA22-LIKE PROTEIN 1.4e-122
HMMPanther TB2/DP1/HVA22 related protein 1.4e-122

See the detailed result >

AT5G42560.1

Model type
Protein coding
Short Description
Abscisic acid-responsive (TB2/DP1, HVA22) family protein
Computational Description
Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-91-P07 introduced

  • F02433 - Specific phenotypes were NOT observed.
  • F09934 - Specific phenotypes were NOT observed.
  • F11617 - Specific phenotypes were NOT observed.
  • F12345 - Specific phenotypes were NOT observed.
  • F13206 - Specific phenotypes were NOT observed.
  • F25218 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found