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  3. RAFL09-92-M23

RAFL09-92-M23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09038)

full reading [+] show sequence

Nucleotide sequence: RAFL09-92-M23 - full reading 
GCAACTCTCT CATTTTCTTA AAATCTCTTT CTCACAGAAC CAAAAACCAA 
AATCTCAGTC TCAAACAAAC AACAACAACA CACGAGTCAC GAGGTTGAAG 
AAGAAGAAGA AGAAGCAAAT ATGTTAAACG GCTGGAGAAG AGCTTTTTGC 
ACTTCCATTC CCAAAGAAAC TAACCAAAAC GACGTCGACG ACGACGGACT 
CGTTGGTCTC CGCCACAAAT CAACCTCTCG ATTCGGCTTT TTCTCAACTC 
CTTCTACGCC TCGTTCTGAT TCCGGCACCG GAACTTACAG CCTCCGTTGC 
AGGACTTCAA CAGCCACCGC CGTCTCCACT ACTTCATCTC TTCCCGGAAC 
TCCAAAGCTT AAGTGCAAAA CCACCACCAC CGGAGAAACA ACTCCCAGAA 
ACAGAAGCCT TGTCTCTCTT TTAACACCTT CTTCTTCTTC TATTTCTCCG 
GCGAGCTTCA CTCTCCTCAA ATCCAAACTC CGATTCAAGC AGAGTAGCAG 
TAACAAATGT GGAATCTGTT TACAGAGTGT GAAATCAGGT CAAGGTACGG 
CGATTTTCAC GGCGGAGTGT TCTCACACGT TTCATTTTCC TTGCGTAACC 
TCACGCGCCG CCGCGAATCA TAACCGTCTT GCTTCTTGTC CGGTTTGCGG 
ATCCTCGCTT TTGCCTGAGA TTCGAAATTA CGCTAAACCG GAATCTCAAA 
TCAAACCGGA AATTAAAAAC AAGTCGTTGA GAGTTTACAA CGATGACGAA 
GCTTTGATTT CATCTCCGAT ATCTCCCGCC GGATTTCACA CAATACTTGA 
ATCAGATGAG AACGAAGACT GCGAGGAGTT TACAGGATTT TCCGTTAATA 
CTCCGTCACC TTTAACGGCG AAATTGTTAA CGGATCGAAA CGTGGACGTT 
AAGCTCTCTC CGGAATCGGC TATCGTTGCG TCGGGTAAAG GCTACGAGAC 
TTACTCCGTC GTCATGAAGG TGAAATCGCC ACCGTTTCCG ACGGCGCGTG 
GATTTGCGCG TAGAGTGCCG GTGGATTTGG TTGCTGTTTT AGACGTAAGC 
GGGAGAAATT CCGGTGGGAA ATTGGAGATG TTGAAACAAA CGATGAGGAT 
TGTGCTTTCG AATCTCCGGG AGATGGATCG TTTATCGATT ATTGCGTTTT 
CGTCCAGCTC GAAACGGTTA TCGCCGTTAC GGAGGATGAC GGCGAACGGG 
AGGAGATCGG CGCGAAGAAT CGTAGATATC ATCACCGTTC CTGGTTCTGT 
CTCCGGCGTC GGAATTGATT TCTCCGGTGA AGGGATGAGT GTGAACGACG 
CGTTGAAGAA AGCGGTTAAG GTGTTAGACG ATCGCCGGCA GAAAAACCCT 
TTCACCGCCG TGTTCGTTTT AACGGACCGT CAAGCCCATC AAGTGGCCCA 
ATTAGCCCAT TCGAGAATCC CTATACACAC CATATGGCTT AGCCACGCGA 
TTCCCGAAGA CGCGTTTGCG AGGACCATCA ACGGTTATTT GAGTTTGTCG 
GTTCAGGATC TCGGTTTACA GCTCGGGATA GTTTCCGGGT TGGGTCAAGG 
AGAGATAACT TCTGTTTACT CTCTTTCCGG TCGACCCGCT TGGCTTGGAA 
CCGGTTCAAT CCGGTTAGGT GATATGTATG CGGAGGAAGA AAGAGCGTTG 
CTGGTTGAAA TCAAATCACC GGTTAACAAT TCCTTAACCG GTAGTAGATC 
TCACAAAATC ATGACCGTTA GATCTCGTTA CGTGGATCCA ACAACTCAGG 
AATTAAGAAA CCCCGAAGAT CGCGCGCTTT TAATACCTAC TCCTCTAACT 
GTCCGATCAT CATCAAATCC CAACATCTCA CGGCTCAGAA ACCTCCACGT 
CAGCACTCGA GCCGTCGCGG AGTCTCGGCG GCTAATAGAG CGTAACCATT 
ACTCCGGAGC TCATAGATTG CTGACGTCAG CTAGAGCATT GCTTGTGCAG 
CACGGTTTGA GCTCGAGCGA TGCGTGTATA CGTGGACTGG ACGCAGAGAT 
AGCTGATCTT AATAGTGTGA AAGGAAGACA CGTGGCGGCA TCAGAGAGTT 
TGGAGTCGCT TACTCCGACG TCGGCTTGGA AAGCGGCGGA GAGGTTGGCT 
AAAGTGGCGA TGGTGAGGAA ACATATGAAC AGAGTCAGTG ACTTGCATGG 
TTTCGAAAAC GCTAGATTTT AGCTTTTTTA TGTATTTAAA TATATTTCCA 
TATTTAGAGT AACAACTTGT GTAATAATAA TCTGATACAA ACAAATAGAA 
ATGGTGCATA AATGGAGTTA TATTTGGCCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT2G22680.1 [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMPfam von Willebrand factor, type A 1.6e-10
HMMPfam Zinc finger, C3HC4 RING-type 8.6e-05
Gene3D no description 2.2e-05
ProfileScan Zinc finger, RING-type 11.427
ProfileScan von Willebrand factor, type A 10.552
superfamily vWA-like 4e-15
superfamily RING/U-box 1.1e-10
HMMSmart Zinc finger, RING-type 5.7e-07
HMMSmart von Willebrand factor, type A 6.2e-09

See the detailed result >

AT2G22680.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 1023 Blast hits to 1022 proteins in 225 species: Archae - 2; Bacteria - 267; Metazoa - 133; Fungi - 122; Plants - 361; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-92-M23 introduced

  • F07224 - Specific phenotypes were NOT observed.
  • F20509 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found