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  3. RAFL09-93-F19

RAFL09-93-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06981)

full reading [+] show sequence

Nucleotide sequence: RAFL09-93-F19 - full reading 
AACTTTAGCC CCAAATTAGA GAGAGATGCA GAAACGGGAG CTTGGGAAAT 
CCGGCGGTAA TTCCGGTGGA TCTTCGGGTC CACCAGCGAA GAGAGGCCGT 
CCCTTCGGTA GTACAAGTGC TAACTCAGCT GCTGCTGCTG CAGCGGCGGC 
AGCAGCGGAC GCGATGTCAC CGTCAGCTTT ACTTGGTCCT TCTCTTCTAG 
TTCACAATTC CTTCGTCGAG CAGAACAATA GAAGAATAGT TCTTGCGTTG 
CAGAGTGGTT TGAAGAGTGA GGTGACATGG GCATTGAACA CACTTACGTT 
GCTTTCCTTC AAGGAAAAAG AAGATATTCG AAGAGATGTC ATGCCTCTTG 
CTAAGATAGC TGGCTTGCTT GATGCCCTTC TCTTAATTAT AGATGATTGG 
CGTGACATAG CTCTCCCAAA GGACCTGACA AGAGGGACTA GAGTTAGAAC 
TTTAGGTACA AATGCTTCAG TTACGGGATT TGGCAATGAG TATGATGCTC 
TAGCCTCTAT TCAACCCCCT GGATCCGGGA TTGGTTCTTC TGCTGCTGAG 
GCATTAGGAA AAAAGAGCAC TGGTAAACAT CAGTCATCTC AGTGGTGGAT 
GGAAGAGGAT GGTTTGTTTA ATCTAGACGA TGAAGGGAGA TCAGAGAAAC 
AAATGTGTGC TATTGCTGCA TCGAACGTTA TCCGCAACTT CTCCTTCATG 
CCTGATAATG AAGTTGTAAT GGCTCAGCAT CGCCATTGCT TAGAAACTGT 
TTTCCAGTGC ATACACGATC ATATGACCGA GGATGAAGAG CTGGTCACAA 
ACTCGCTAGA GACAATTGTA AACCTAGCGC ATTTGATGGA TCTTCGAATT 
TTCAGCTCGC TTAAGCAGTC ATACATCAAC ATAAATGAAA AGAAAGCTGT 
TCAAGCTGTG GTCGGAATCC TCAATTCTTC TGTCAAAGCT TGGAATTGTG 
CTGCTGCTGA GTTGCTAGGG CGTTTGATAA TCAATCCGGA CAATGAACCT 
TTCATTAGTC CTTTAATTCC GCAGATACAC AAGCGACTAA TCGATCTTTT 
GAGCATACAA GCCGTTGATG CACAAGCTGC AGCTGTTGGA GCACTCTACA 
ATCTCGTGGA AGTTAACATG GATTGCAGAT TAAAGCTAGC AAGTGAGAGA 
TGGGCGGTTG ATAGGTTGCT GAAAGTGATA AAGACTCCGC ATCCGGTTCC 
AGAAGTATGT AGGAAAGCTG CAATGATCCT TGAGAACCTT GTCTCGGAGC 
CTCAAAACAG AGGATTGCTA CTCGCGTATG AGAATGCTTT CGCTGAGCTG 
CTTTTTCAAG AGGGTAAGTA TTCTGATTCA TTTGCTAGGA TTTTGTATGA 
ACTCACTGCT AGATCTAATA GCAGAGTTGC TTCAGCTAGA GGAATCTGGG 
GCATGTAAAA GTCTTCTCTA GATTAGTGGG TTTGATTAAT TGATTGTGTT 
GTAAACTTTA ATCATTTGCT ATGTATTAAA AAAGCAGTGT TGTTGAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT3G22990.1 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
superfamily Armadillo-type fold 2.8e-16
HMMPanther BRG-1 ASSOCIATED FACTOR 250 (BAF250) 7.3e-07
Gene3D Armadillo-like helical 1.9e-05
ProfileScan Armadillo 9.432

See the detailed result >

AT3G22990.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Curator Summary
Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.
Computational Description
LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 69 Blast hits to 69 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-93-F19 introduced

  • F25722 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found