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  3. RAFL09-93-H23

RAFL09-93-H23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06984)

full reading [+] show sequence

Nucleotide sequence: RAFL09-93-H23 - full reading 
CCCCCTTTTT CACTCTCTTC ATTTATTCTT CCCCTCATCA TCATCATCAT 
CTTCTTCTTT AACCAAAAAC ACAACTTACA AGAAAACTGT TGAATCTTTG 
TATTTATTTA CATCTCCTTT GACCTTTAAT AAGAATCTGA GTGGTTGGTC 
TCTGATTTGA TGAGATGACT GTTGAGCTGA TGATGAGCAG CTACAGCGGC 
GGCGGAGGAG GAGGTGATGG TTTTCCTGCA ATCGCCGCGG CGGCGAAAAT 
GGAAGATACC GCTTTGAGAG AAGCTGCTTC TGCAGGGATT CACGGTGTGG 
AGGAGTTTCT TAAACTGATC GGTCAAAGTC AACAACCAAC GGAGAAGAGT 
CAGACGGAGA TAACCGCGGT GACTGACGTC GCCGTTAACA GCTTCAAGAA 
GGTCATTTCT CTACTCGGTA GATCTAGAAC CGGACACGCT AGATTCAGAC 
GAGCTCCCGC GTCAACGCAA ACGCCGTTTA AGCAAACGCC GGTGGTTGAG 
GAGGAGGTGG AGGTGGAGGA GAAGAAGCCA GAAACAAGCT CCGTGTTAAC 
AAAACAGAAA ACAGAGCAAT ATCACGGTGG TGGATCTGCG TTTAGAGTTT 
ATTGTCCAAC ACCAATTCAT CGTCGTCCTC CTCTATCACA CAATAACAAC 
AACAATCAGA ATCAAACAAA GAACGGTTCG TCTTCTTCAT CTCCTCCGAT 
GCTCGCAAAC GGAGCACCGT CAACGATAAA CTTTGCGCCG TCACCACCAG 
TCTCAGCGAC GAACTCATTC ATGTCTTCTC ATAGATGTGA CACCGATAGT 
ACTCACATGT CATCAGGATT CGAGTTCACT AACCCATCTC AGCTCTCTGG 
TTCGAGAGGT AAACCTCCTT TATCATCAGC TTCGTTGAAG AGAAGATGTA 
ATTCATCTCC CTCAAGCCGT TGCCATTGCT CCAAGAAAAG GAAATCAAGA 
GTAAAAAGAG TGATTAGAGT TCCAGCAGTA AGTAGCAAAA TGGCTGATAT 
ACCATCAGAT GAGTTTTCAT GGAGAAAATA TGGTCAAAAA CCAATCAAAG 
GCTCTCCTCA TCCTCGGGGA TATTACAAGT GCAGCAGTGT AAGAGGTTGT 
CCGGCGCGTA AGCATGTGGA GCGTGCACTA GATGATGCGA TGATGCTAAT 
CGTGACGTAC GAAGGAGACC ACAACCATGC TTTGGTTCTC GAGACGACGA 
CGATGAATCA TGACAAAACT CTTTAGTTTC TCGAGTTTGA GGGGAACTGT 
CTGTGTGTGA CCACTATCCA GATTAGTCAA CGACAGAGTG GGCCCGCACT 
GCACTTTTTT ATTCTTTTCT TTTTGAAAAG CTTTTGCTTT ATCTTTCTTT 
TTGATTGGAG GAAATAGAGG GAGGGGAGAT AAAGACGAGA GAGGAACGTT 
GTGGATCTTG ATGGAAGTTG AATCATGTGA ATGTCCTTTT CTGTTTGAAA 
AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT4G24240.1 [+] show detail - WRKY DNA-binding protein 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan DNA-binding WRKY 29.872
Gene3D no description 1.5e-23
HMMPfam DNA-binding WRKY 4.8e-28
HMMPfam Transcription factor, WRKY, Zn-cluster 8.9e-17
HMMSmart DNA-binding WRKY 5.9e-37

See the detailed result >

AT4G24240.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 7
Curator Summary
Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.
Computational Description
WRKY DNA-binding protein 7 (WRKY7); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 3521 Blast hits to 3002 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 39; Fungi - 4; Plants - 3353; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-93-H23 introduced

  • F29739 - rosette leaf::decreased length / stem::abnormal / cauline leaf::desaturated green / stem::present in fewer numbers in organism / stem::abnormal / stem internode::decreased length / fruit::abnormal / stem::abnormal / rosette leaf::decreased size / stem::decreased thickness / sporophyte vegetative stage::increased speed

Mutant lines with disrupted or induced

3 mutant lines found