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  3. RAFL09-93-L12

RAFL09-93-L12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09050)

full reading [+] show sequence

Nucleotide sequence: RAFL09-93-L12 - full reading 
AAATCAATCA GAGAGAGAGC TTCTGAGACA TAAACATCAA TTCAAATCGA 
CGCAAGCAAA GAAAGCAAAA TGGAAAATGG AAGCGGGAAG GTGTTGAAGC 
CGATGGACTC AGAGCAATTG AGAGAGTACG GACATCTGAT GGTTGATTTC 
ATTGCTGATT ACTACAAAAC CATCGAAGAT TTCCCTGTTC TTAGCCAAGT 
TCAGCCTGGT TATCTTCATA AGCTTTTGCC TGATTCTGCA CCTGACCACC 
CTGAAACTCT GGACCAAGTT CTTGATGATG TTCGAGCAAA GATATTGCCT 
GGAGTAACGC ATTGGCAAAG CCCGAGTTTC TTTGCTTATT ATCCTTCTAA 
CAGCAGTGTT GCTGGGTTCT TGGGTGAGAT GTTGAGTGCT GGTCTTGGCA 
TTGTTGGTTT TAGTTGGGTT ACTTCTCCAG CTGCCACAGA GCTAGAAATG 
ATCGTTCTTG ATTGGGTTGC TAAACTTCTC AACCTACCCG AGCAGTTTAT 
GTCCAAAGGA AATGGAGGTG GAGTTATACA AGGGTCAGCT AGTGAAGCTG 
TTCTTGTTGT TCTGATTGCT GCACGCGACA AGGTTTTAAG AAGCGTTGGC 
AAAAACGCGC TTGAGAAGCT CGTTGTCTAC TCCTCTGACC AGACTCATTC 
AGCTTTACAG AAGGCTTGCC AGATTGCTGG AATCCATCCA GAGAATTGCA 
GGGTGCTGAC AACAGACTCT TCTACAAATT ACGCTCTGCG TCCAGAATCG 
CTTCAAGAAG CTGTTTCTAG GGATCTTGAA GCTGGATTGA TTCCATTCTT 
CTTATGTGCT AATGTTGGGA CCACTTCTTC AACCGCAGTT GATCCATTAG 
CTGCACTGGG GAAGATTGCT AATAGCAATG GAATTTGGTT TCACGTGGAT 
GCAGCATATG CTGGAAGTGC CTGTATATGT CCAGAGTATC GGCAATACAT 
TGACGGTGTA GAAACTGCAG ACTCTTTTAA CATGAATGCT CACAAATGGT 
TCCTCACTAA CTTCGATTGT TCCCTTCTTT GGGTAAAGGA TCAAGATTCT 
CTTACATTAG CTCTTTCAAC AAATCCAGAG TTTCTCAAAA ACAAGGCCTC 
TCAGGCAAAC TTGGTTGTTG ATTACAAAGA TTGGCAAATC CCTCTCGGAC 
GAAGATTCAG ATCATTGAAA CTATGGATGG TTTTAAGGCT CTATGGATCT 
GAGACCTTGA AGAGCTATAT AAGAAACCAT ATCAAACTGG CTAAAGAATT 
CGAACAACTT GTCTCTCAAG ATCCTAACTT CGAGATTGTC ACACCTCGGA 
TCTTTGCTCT TGTCTGTTTC CGCCTCGTGC CTGTGAAAGA CGAAGAAAAG 
AAGTGTAATA ACCGAAACCG TGAACTCCTA GACGCAGTGA ACTCTTCAGG 
GAAACTCTTC ATGTCGCACA CTGCTTTATC GGGGAAAATC GTACTACGTT 
GCGCAATAGG AGCGCCATTG ACGGAGGAGA AGCACGTTAA GGAGGCGTGG 
AAGATTATTC AGGAAGAAGC ATCTTACTTG CTTCACAAGT AAATATGATA 
AAACAGTAAA AGAATAAAAC GGTTTTTGCC AACAAAACGA AGCACTTCGG 
TTTGGTTTGG TTTAATTTGA TAATATAATA ATAAAACAGA AAATTGCTTA 
AGTAAGACTT ATCAACTTCG GTTTGATTTC GGTACACTTT AGTAAGGTGA 
TCTTTCTTGT GTGTATTTTA TCCTCTATTT TTTTTTTTAC CAATTGTGTG 
TATTTTATCT ATTTGGTTTG GGTTTATTTT GTGGTTAATT AATGTAAGCA 
ATGATAATAA AATGTTCTAT TTTAAGAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT2G20340.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
PatternScan Pyridoxal-phosphate binding site 0
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
superfamily Pyridoxal phosphate-dependent transferase, major domain 3.3e-148
Gene3D no description 8.5e-32
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 8.2e-95
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 1.4e-31
HMMPfam Pyridoxal phosphate-dependent decarboxylase 5.2e-146
HMMPanther AROMATIC AMINO ACID DECARBOXYLASE 2.6e-126
HMMPanther Pyridoxal phosphate-dependent decarboxylase 2.6e-126

See the detailed result >

AT2G20340.1

Model type
Protein coding
Short Description
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Computational Description
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: response to wounding, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: L-tyrosine decarboxylase (TAIR:AT4G28680.1); Has 5452 Blast hits to 5431 proteins in 1792 species: Archae - 99; Bacteria - 1888; Metazoa - 2300; Fungi - 264; Plants - 262; Viruses - 5; Other Eukaryotes - 634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-93-L12 introduced

  • F08313 - Specific phenotypes were NOT observed.
  • F10725 - Specific phenotypes were NOT observed.
  • F15536 - Specific phenotypes were NOT observed.
  • F17339 - Specific phenotypes were NOT observed.
  • F18530 - Specific phenotypes were NOT observed.
  • F21440 - Specific phenotypes were NOT observed.
  • F24643 - Specific phenotypes were NOT observed.
  • F25633 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found