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  3. RAFL09-93-L22

RAFL09-93-L22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17911)

full reading [+] show sequence

Nucleotide sequence: RAFL09-93-L22 - full reading 
GAGAAATCGC TTCACCATTC CCAAATCTCT CTTCCATTTT CTCCACACAA 
ATTTCTCTTC AATCTCCGAT AATGGAAGGA ACCGGCGTTG TGGCGGTGTA 
CGGTAACGGT GCGATAACGG AGGCGAAGAA ATCTCCCTTC TCCGTGAAGG 
TCGGTTTGGC TCAGATGCTC CGTGGTGGTG TTATCATGGA TGTCGTCAAC 
GCCGAGCAAG CTCGTATCGC CGAGGAGGCT GGTGCTTGCG CCGTCATGGC 
TTTGGAGCGT GTTCCTGCTG ATATCCGCGC TCAAGGAGGC GTCGCTCGTA 
TGAGCGATCC ACAAATGATT AAAGAAATCA AACAAGCCGT TACGATTCCG 
GTGATGGCTA AGGCTAGGAT TGGTCATTTC GTTGAAGCTC AGATCCTTGA 
AGCAATTGGA ATCGATTACA TCGATGAGAG CGAGGTTTTG ACTCTTGCTG 
ATGAAGATCA TCACATCAAC AAGCATAATT TCCGGATCCC GTTCGTTTGC 
GGTTGCCGGA ATCTCGGCGA GGCTCTGAGG AGGATCCGTG AAGGTGCGGC 
GATGATTAGG ACCAAAGGTG AAGCTGGAAC CGGTAACATT ATTGAAGCTG 
TGAGGCATGT GAGGTCTGTT AATGGTGACA TTAGGGTTTT GCGAAACATG 
GATGATGATG AGGTTTTCAC TTTCGCTAAG AAATTAGCCG CTCCGTACGA 
TCTCGTGATG CAGACTAAGC AGCTTGGTCG TCTTCCTGTA GTCCAATTCG 
CCGCCGGTGG AGTGGCTACT CCGGCTGATG CAGCTCTCAT GATGCAGCTT 
GGATGTGATG GTGTCTTTGT TGGTTCTGGT ATCTTCAAGA GCGGTGACCC 
AGCTCGTCGT GCACGTGCCA TTGTTCAGGC TGTGACTCAT TACAGTGACC 
CTGAGATGCT TGTGGAGGTG AGCTGTGGGC TTGGAGAAGC CATGGTTGGG 
ATCAATCTCA ACGATGAGAA GGTTGAGAGG TTCGCTAATC GCTCCGAGTG 
ATCAAAGAAA TAAAAGGTAA AATATCTCAG ACGAAATGGT TTCAGAATTT 
TCTCAGACCA TTTTGCAGTA ATCTCTTTGA AAAGAAGAAG ATGATGATAT 
TGTTGGTAGT TTGTATCCTT TGTGTTTTCC TTATAATCTT TGATAGTCTT 
TTGTTATTGT AACTCGTAAT CCCTTTGCAA GAACAAGTTT GTCAGTTATA 
ATAATGTACT ACTCTCTTGA TCGATCAGTT GGTTTTGAAT CTGATATATT 
CTTCGATCCA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G01410.1 [+] show detail - Aldolase-type TIM barrel family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribulose-phosphate binding barrel 5.3e-49
PatternScan Vitamin B6 biosynthesis protein 0
HMMTigr Vitamin B6 biosynthesis protein 1.1e-165
ProfileScan Vitamin B6 biosynthesis protein 174.634
HAMAP Vitamin B6 biosynthesis protein 50.496
HMMPfam Vitamin B6 biosynthesis protein 8.9e-116
HMMPIR Vitamin B6 biosynthesis protein 7.1e-216

See the detailed result >

AT5G01410.1

Model type
Protein coding
Short Description
Aldolase-type TIM barrel family protein
Curator Summary
Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.
Computational Description
REDUCED SUGAR RESPONSE 4 (RSR4); FUNCTIONS IN: protein homodimerization activity, protein heterodimerization activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, endomembrane system, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: pyridoxine biosynthesis 1.1 (TAIR:AT2G38230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-93-L22 introduced

  • F01738 - Specific phenotypes were NOT observed.
  • F08539 - Specific phenotypes were NOT observed.
  • F09234 - Specific phenotypes were NOT observed.
  • F12108 - Specific phenotypes were NOT observed.
  • F13523 - rosette leaf::upturned / rosette leaf::abnormal / rosette leaf::increased width / stem::abnormal / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

6 mutant lines found