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  3. RAFL09-94-E22

RAFL09-94-E22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17913)

full reading [+] show sequence

Nucleotide sequence: RAFL09-94-E22 - full reading 
GAACGGAACA ATCAAATCAA TCATACAGAA GCAGCTAATG GCGTTGAGAA 
TCAGGAAGGC GACGACGACA CTTCTCTTCT CCGGTGGGAT TACTCATGGA 
ACGGATCGGA TCGCGAGAAC CGGAGCATTG CTCAGCCGTT GGATCTCCTC 
TGCTTCGTCA TCTTCCGCTG TTGTAGCGGA TGATGAATCT AGTGGGATTT 
ACGGATTGGG AAGTGTGTTG AAAGAGTATG AAGATTATAG GAGATCTCTC 
TATGGTGAGA TCACTCATAA GGCTTTGCTT GTTGATGCTG TTGGTACTCT 
CCTTGTTCCC GCTCAACCTA CTGCTCAGAT ATATAAGAAT ATTGGAGAGA 
AGTACGGAGT GGAGTACTCG GAGGCTGAGA TACTTACTAG ATACAGAAGA 
GCTTATCAGA AACCATGGGG TGGATCTCAT CTTAGATATG TAAACGATGC 
AAGACCTTTC TGGCAGTATA TAGTGACTGC ATCAACAGGC TGCTCGGATT 
CACAGTACTT TGAAGAGCTT TACAGCTATT TTACTACAGA ACAGGCGTGG 
AAGTTATGTG ATCCAGATGC AGGGAAAGTG TTTAAGGCTA TTAAAGAAGC 
GGGTGTAAAA GTTGCAATAG TCTCCAACTT CGATACTCGG TTAAGACCTC 
TCCTACGTGC ATTGAGATGT GAAGATTGGT TTGATGCTGT AGCTGTTTCA 
GCAGAAGTTG AAGCGGAAAA ACCAAACCCG ACTATCTTCT TAAAAGCTTG 
TGAGTTATTA GAAGTGAATC CCGAGGATGC GGTTCATGTA GGAGATGACC 
GTAGGAATGA TGTATGGGGA GCTAGAGACG CAGGCTGTGA CGCTTGGCTC 
TGGGGAAGTG AAGTTACGTC ATTTAAACAG GTTGCTCAAC GGATAGGAGT 
GAAGGTCTGA AGCAAAAGCA TATGAGAGAA ATGGTTCAGA GACATGTTCA 
GACTTCAGTT TTAGCTTCTT CTTTTTTTGT GTGAGCAGTT TTGTATATTC 
CATTTCTCTT TTGTAGCATA ATGTGTGTAA TATATGTTGC GGCTAATGTA 
GAAAACCAGA AAACAATGTA TAATAAAAGA TCAATAATAA GC

Gene models with high sequence identity

  1. AT2G41250.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 4.2e-21
superfamily HAD-like 3.2e-34
HMMTigr HAD-superfamily hydrolase, subfamily IA, REG-2-like 1.9e-98
HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 1 5.2e-05
HMMPfam Haloacid dehalogenase-like hydrolase 5.6e-22
HMMPanther HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN C 1.9e-61
HMMPanther HALOACID DEHALOGENASE-LIKE HYDROLASE 1.9e-61
FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08
FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08
FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08
FPrintScan Haloacid dehydrogenase/epoxide hydrolase 5.3e-08

See the detailed result >

AT2G41250.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G14310.1); Has 5345 Blast hits to 5345 proteins in 1611 species: Archae - 258; Bacteria - 4323; Metazoa - 249; Fungi - 67; Plants - 142; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-94-E22 introduced

  • F23612 - Specific phenotypes were NOT observed.
  • F26504 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found