1. Home
  2. Full-length cDNAs
  3. RAFL09-94-G18

RAFL09-94-G18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09061)

full reading [+] show sequence

Nucleotide sequence: RAFL09-94-G18 - full reading 
AGTTTGAAAT TTGAATCCAT TGAACCAAAA TTTGAAGGAG TTGCATATAT 
AATAATATAA ATCAGAATGA TGTAGCCGCC ACACCTTTTT GTTTCCACAA 
AACTCTTTTT CTGTGATGGA TCCGCTAATG TAGCCATATT TTCAATATAT 
ATCACTTTCT CTGGCATCTT CGCTACCGTG TACGTCTCTC TTTCTCTCCC 
TCCCCTCCTT GGCTTTTTTC AAGTTCCCAC CATAAACGCA GAGGGAGTTA 
AGAAATGGAG GATAGGAGGT GTGATGTGTT GTTTCCATGT TCATCATCGG 
TTGATCCTCG CTTGACAGAG TTTCATGGGG TCGACAACTC TGCTCAGCCG 
ACAACATCAT CCGAAGAGAA GCCAAGGAGT AAGAAGAAGA AGAAAGAGAG 
AGAAGCGAGG TACGCGTTCC AGACAAGAAG CCAGGTTGAT ATACTGGATG 
ATGGATACAG GTGGAGGAAG TACGGCCAAA AAGCAGTCAA GAACAATCCA 
TTCCCCAGGT ACGTACTTAA TCATCAATGA ATGATACTGT ATGCTTGCTA 
TGGTGATCAA ATAAGAGACT CATATACATA CATGTAAAAT ATGAATATAT 
ATATATATAG GAGCTATTAT AAGTGCACAG AAGAAGGATG CAGAGTGAAG 
AAGCAAGTGC AGAGGCAATG GGGAGACGAA GGAGTGGTGG TGACGACATA 
CCAAGGTGTT CATACACATG CCGTTGATAA ACCCTCTGAT AATTTCCACC 
ACATCTTGAC ACAAATGCAC ATCTTCCCTC CCTTTTGCTT GAAGGAATGA 
TTAGAGGAAT TGGATTGTAA TATTTACTTT CCCAAAAACG TTGGGCTCAC 
ACCATCAGAC CTTTT

Gene models with high sequence identity

  1. AT3G01970.1 [+] show detail - WRKY DNA-binding protein 45
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.3e-08
Gene3D no description 1.6e-09
ProfileScan DNA-binding WRKY 14.114
ProfileScan DNA-binding WRKY 15.411
HMMPfam DNA-binding WRKY 6.7e-10
HMMPfam DNA-binding WRKY 4e-14
HMMSmart DNA-binding WRKY 0.00064
HMMSmart DNA-binding WRKY 8.1e-08

See the detailed result >

AT3G01970.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 45
Curator Summary
member of WRKY Transcription Factor; Group I
Computational Description
WRKY DNA-binding protein 45 (WRKY45); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 75 (TAIR:AT5G13080.1); Has 3497 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3482; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-94-G18 introduced

  • F20948 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found