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  3. RAFL09-94-M06

RAFL09-94-M06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10006)

full reading [+] show sequence

Nucleotide sequence: RAFL09-94-M06 - full reading 
GTATTCGCGT GAAGATAATT TCTCACAATT AGGGTTTTTT TTTTCTTCTG 
AGTTAACTGT TCCATCTCCA TCCTAATCTT CACCTTCTCC TTGATTTCGA 
GATCTCTGTC AATTTGTTGA ATCTGTTCTT TATCTAATTA GCTCAACTCC 
GAGTCTTTGC TGGATTTTGA AGCTTTTGTA GCTGAAGCAA ATTTGTAATC 
TGTGATGGTG TATGCACTGA TTCTGGGTAT GGTATTGTAC TCTAGGATCT 
CGTAGCGAGA ATGCCAGGCA TTCCTCTTGT TAGTCGTGAA ACCTCTTCTT 
GTTCAAGAAG CACAGAGCAG ATGTGCCATG AAGACTCCCG TCTGCGTATT 
TCGGAAGAGG AGGAGATTGC TGCTGAAGAG AGCTTGGCTG CCTATTGCAA 
GCCTGTTGAA CTCTACAATA TCATTCAACG CCGTGCTATT AGGAATCCCT 
TGTTTCTTCA GCGATGTTTG CATTATAAGA TTGAGGCAAA ACATAAAAGG 
AGAATACAAA TGACTGTATT CCTCTCGGGC GCTATAGATG CTGGGGTACA 
AACTCAAAAA TTATTCCCTC TGTATATTTT GTTGGCAAGA CTCGTTTCTC 
CTAAGCCTGT CGCTGAGTAT TCTGCAGTAT ATAGGTTCAG TCGAGCATGT 
ATCCTAACTG GTGGATTGGG GGTTGATGGA GTTAGTCAAG CCCAAGCCAA 
CTTTCTTCTC CCTGATATGA ATAGACTCGC ATTGGAGGCA AAATCAGGAT 
CACTCGCTAT CTTGTTTATC AGCTTTGCTG GTGCGCAAAA TTCTCAATTT 
GGCATTGATT CAGGCAAGAT TCATTCAGGA AATATAGGAG GACATTGTTT 
ATGGAGCAAA ATACCTCTGC AATCACTGTA TGCGTCGTGG CAGAAATCAC 
CAAACATGGA CTTGGGACAG AGAGTAGACA CAGTCTCTCT TGTTGAAATG 
CAGCCTTGCT TCATAAAGCT AAAGTCCATG AGTGAGGAAA AGTGTGTCTC 
GATTCAGGTG CCCAGCAATC CACTCACCTC GAGCTCTCCG CAGCAAGTGC 
AAGTCACCAT ATCTGCAGAA GAAGTTGGGT CAACGGAAAA ATCTCCTTAT 
AGTTCATTTT CATATAATGA CATCTCTTCC TCTTCCTTGT TGCAAATTAT 
CAGGTTGAGA ACAGGAAATG TAGTTTTCAA CTACAGATAC TATAACAACA 
AATTGCAGAA GACTGAAGTA ACTGAAGACT TTTCTTGTCC ATTCTGCTTA 
GTAAAATGTG CCAGTTTCAA GGGCCTGAGA TATCACTTGC CATCAACCCA 
CGATCTCCTC AATTTCGAGT TTTGGGTAAC TGAAGAATTT CAGGCGGTAA 
ATGTCTCCCT CAAGACTGAG ACAATGATAT CCAAGGTTAA TGAGGATGAC 
GTTGACCCAA AGCAGCAAAC TTTCTTTTTT TCACGGAGGA GGCAAAAGAG 
TCAGGTACGG AGCTCAAGGC AAGGGCCTCA TCTTGGATTA GGTTGCGAGG 
TGCTAGATAA GACTGATGAT GCTCATTCTG TTAGAAGTGA GAAGAGCCGA 
ATACCACCTG GAAAGCATTA CGAAAGAATT GGGGGTGCTG AGTCTGGTCA 
AAGAGTTCCT CCTGGCACGA GTCCTGCAGA CGTGCAATCA TGTGGGGATC 
CAGATTATGT GCAGTCGATA GCTGGAAGTA CAATGTTGCA GTTTGCAAAA 
ACGAGGAAAA TATCTATAGA ACGGTCGGAC TTGAGGAACC GAAGCCTCCT 
TCAGAAGAGA CAGTTCTTCC ACTCTCATCG AGCTCAGCCC ATGGCTCTAG 
AACAAGTACT TTCGGACCGG GATAGTGAAG ATGAAGTTGA TGATGATGTG 
GCAGATTTTG AAGATAGAAG GATGCTCGAT GATTTCGTTG ATGTGACTAA 
AGATGAGAAA CAGATGATGC ACATGTGGAA CTCGTTTGTG AGGAAGCAGC 
GAGTATTAGC AGATGGTCAC ATTCCATGGG CATGCGAGGC ATTCTCAAGA 
TTGCACGGAC CCATCATGGT TCGAACACCG CACTTGATTT GGTGCTGGAG 
AGTGTTTATG GTGAAACTGT GGAACCACGG TCTTCTTGAT GCCCGAACCA 
TGAACAACTG TAATACCTTT CTCGAACAGC TCCAAATTTG AAAACCCAAG 
AAATCATTAA TTTAAGTA

Gene models with high sequence identity

  1. AT5G51230.2 [+] show detail - VEFS-Box of polycomb protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Polycomb protein, VEFS-Box 1.3e-68
HMMPanther POLYCOMB GROUP PROTEIN 1.3e-55

See the detailed result >

AT5G51230.2

Model type
Protein coding
Short Description
VEFS-Box of polycomb protein
Curator Summary
Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.
Computational Description
EMBRYONIC FLOWER 2 (EMF2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.1); Has 297 Blast hits to 235 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-94-M06 introduced

  • F03823 - Specific phenotypes were NOT observed.
  • F17230 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found