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  3. RAFL09-95-B11

RAFL09-95-B11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09078)

full reading [+] show sequence

Nucleotide sequence: RAFL09-95-B11 - full reading 
ATTCCTCTTT TCTTCGTCTC CCACCATTTC TGCAGAAGAA GACAAATAAA 
AAAGCTCTCA TTTATCTTCG TGGAGATCTA AAAGAAGGAG GAAGACATTT 
CTTCCCTCTG GATCTCCAAA AGTAAGAACA TTTACAAGAA ACGAGAGGTT 
TGGGTGGGGA AGGAAAGAAG GAGGAAGAGG CAATGTCAGC TAGGTATTGG 
TGTCACATGT GTTCACAAAT GGTGAATCCA GTTATTGGTG CCGAGATCAA 
ATGCCCCTTT TGCCAAAGCG GGTTTGTCGA GGAAATGAGC CGTGAGATTA 
ATGGCGGCAG CAGTAGCAGT CTAAGGGAGG TTCAAGACCC TGAGATTGAT 
TTTGGTACAG ACCGTGCATT GTCTCTATGG GGTCCAATCT TGCTTGGAAT 
GATGAGTAAT CCTCGTAGAC GTAGAAGGTT TAGGAGGACA GAGTTTGGTG 
TGGATAATGA TGAGGTCAAT GTATCTGATG ATGTTGATGG AAATGACAGC 
GTCGATATTG ATCGACATCA TCATCGTCGT CATCGCCACA GGCAACAAGG 
TAGAGAGATT GATTTAGACA GAGAGTTTGA GTCTATCCTT AGGAGGAGAC 
GGAGAAGCTC AGCTACTATA TTGCAGTTGC TTCAGGGTAT TCGTGCAGGG 
ATTGCTTCTG AGTATGAGAG CTCGGATCGA GACCTGTTAA ATCAATCAGC 
TGTTGTTCAG GGTTCAACGA GTTTGAATCA AAACCGGAAC AATACTTCTC 
TTTCTGCAAT TGGAGATTAC TTTGTTGGAT CCAGTTTAGA CCATTTGCTT 
GAACATCTAG CTGATAATGA TTCAATCAGG CACGGGAGTC TTCCAGCACG 
TAAAGAAGTT GTGGATAATC TCCCAACGGT TAAGATAAGT GAATCATTGC 
AGTGCTCGAT TTGTTTGGAT GATTTTGACA AAGGAAGTGA AGCTAAAGAG 
ATGCCGTGTA AGCACAAGTT TCACATCCGG TGTATAGTAC CGTGGCTCGA 
GCTTCACAGT TCATGTCCCG TGTGCCGATA TGAACTCCCT CCTGATGATG 
AGACCAAGGT TAATCCTGTA AGACCGAGAA CAAGAACTCT AGAGATCAAC 
GTAAGTAATG AGAATGTGGA AGATGATGCA AGGAACAGTA ATGTGAGCGA 
GAGAAGGTTC TCTTTTCCAT GGCCGTTCAG CGGATTATTC TCTTCATCCT 
CTTCGTCATC CGCATCGGCC TCGGGGTCAT CTCATCTCGG TGAGAACTCG 
TAAACTGCTA TTCCTCAGCT TATAGTACAT AAAATCTTGT TCACTCAGAT 
TGTTGAATAC TGCATAACAA ATAAACACTT TCGAGGAATG GAATCTTTTC 
TTTATTTG

Gene models with high sequence identity

  1. AT4G26400.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, RING-type 0.000000036
Gene3D no description 0.000000000000056
ProfileScan Zinc finger, RING-type 12.489
HMMPanther RING ZINC FINGER PROTEIN 3.9e-40
superfamily RING/U-box 1.1e-16
HMMPfam Zinc finger, C3HC4 RING-type 0.00000084

See the detailed result >

AT4G26400.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-95-B11 introduced

  • F07150 - Specific phenotypes were NOT observed.
  • F15248 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness / cauline leaf::epinastic / cauline leaf::desaturated green / fruit::abnormal / stem::abnormal / rosette leaf::desaturated green / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / whole plant::decreased height / stem internode::decreased length / fruit::abnormal
  • F16439 - Specific phenotypes were NOT observed.
  • F21905 - Specific phenotypes were NOT observed.
  • F25743 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found