1. Home
  2. Full-length cDNAs
  3. RAFL09-95-E23

RAFL09-95-E23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17919)

full reading [+] show sequence

Nucleotide sequence: RAFL09-95-E23 - full reading 
CCGGAACGAT TTGTTGGGTT TTCTTCTTTG TACTCTCTCC TCACATTAGC 
TTTTGTTGGT GGGATTTTTT GAGGATGGTG ATTGCTGCAG CTGTCATCGT 
GCCTTTGGGC CTTCTCTTCT TCATATCTGG TCTCGCTGTC AATCTCTTTC 
AGGCAGTTTG CTATGTACTC ATTCGACCAC TGTCTAAGAA CACATACAGA 
AAATTAACCG GGTGGTTGCA GAAACCTTGT GGTTGGAGCT TGTATGGATA 
GTTGACTGGT GGGCTGGAGT TAAGATCCAA GTGTTTGCTG ATAATGAGAC 
CTTCAATCGA ATGGGCAAAG AACATGCTCT TGTCGTTTGT AATCACCGAA 
GTGATATTGA TTGGCTTGTG GGATGGATTC TGGCTCAGCG GTCAGGTTGC 
CTGGGAAGCG CATTAGCTGT AATGAAGAAG TCTTCCAAAT TCCTTCCAGT 
CATAGGCTGG TCAATGTGGT TCTCGGAGTA TCTCTTTCTG GAAAGAAATT 
GGGCCAAGGA TGAAAGCACT CTAAAGTCAG GTCTTCAGCG CTTGAGCGAC 
TTCCCTCGAC CTTTCTGGTT AGCCCTTTTT GTGGAGGGAA CTCGCTTTAC 
AGAAGCCAAA CTTAAAGCCG CACAAGAGTA TGCAGCCTCC TCTGAATTGC 
CTATCCCTCG AAATGTGTTG ATTCCTCGCA CCAAAGGTTT CGTGTCAGCT 
GTTAGTAATA TGCGTTCATT TGTCCCAGCA ATTTATGATA TGACAGTGAC 
TATTCCAAAA ACCTCTCCAC CACCCACGAT GCTAAGACTA TTCAAAGGAC 
AACCTTCAGT GGTGCATGTT CACATCAAGT GTCACTCGAT GAAAGACTTA 
CCTGAATCAG ATGACGCAAT TGCACAGTGG TGCAGAGATC AGTTTGTGGC 
TAAGGATGCT CTGTTAGACA AACACATAGC TGCAGACACT TTCCCCGGTC 
AACAAGAACA GAACATTGGC CGTCCCATAA AGTCCCTTGC GGTGGTTCTA 
TCATGGGCAT GCGTACTAAC TCTTGGAGCA ATAAAGTTCC TACACTGGGC 
ACAACTCTTT TCTTCATGGA AAGGTATCAC GATATCGGCG CTTGGTCTAG 
GTATCATCAC TCTCTGTATG CAGATCCTGA TACGCTCGTC TCAGTCAGAG 
CGTTCGACCC CAGCCAAAGT CGTCCCAGCC AAGCCAAAAG ACAATCACCA 
CCCAGAATCA TCCTCCCAAA CAGAAACGGA GAAGGAGAAG TAAAAACTGG 
TTCTCACAGA TCCAAACATC AAACACAACA AGAAGAAGCG CGTGTCAGTT 
TTGTTATAAG AAACAGAAAA CCAAAAAAAA AAGACATCCA AATGAAAAAT 
CCCTTAATAT TATCAACTCC GTTTTGTTCA GCTACTATAT TACTACTACT 
ACTACTACGC AGCCTATGTC TCTTAGTCGA TTGATGTATA GGGTCATGAT 
CAAATCAACG ATTTAATCCC TATAGTCCCT TGGGATTTTT TTTCTCAAGT 
GCATAGGCCT TGTATAACTT TCTATTTTTA GATTGGAATT TGGGATTGAT 
AAAAAAAA

Gene models with high sequence identity

  1. AT3G57650.1 [+] show detail - lysophosphatidyl acyltransferase 2
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPanther 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1.3e-152
HMMPanther 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1.3e-152
HMMSmart Phospholipid/glycerol acyltransferase 3.5e-22
superfamily Glycerol-3-phosphate (1)-acyltransferase 6.7e-06
HMMPfam Phospholipid/glycerol acyltransferase 3.3e-20

See the detailed result >

AT3G57650.1

Model type
Protein coding
Short Description
lysophosphatidyl acyltransferase 2
Curator Summary
Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity.
Computational Description
lysophosphatidyl acyltransferase 2 (LPAT2); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: lysophosphatidyl acyltransferase 3 (TAIR:AT1G51260.1); Has 1646 Blast hits to 1643 proteins in 516 species: Archae - 0; Bacteria - 639; Metazoa - 536; Fungi - 213; Plants - 138; Viruses - 2; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-95-E23 introduced

  • F02203 - Specific phenotypes were NOT observed.
  • F09717 - Specific phenotypes were NOT observed.
  • F10622 - Specific phenotypes were NOT observed.
  • F12647 - rosette leaf::dark green / rosette leaf::decreased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::present in fewer numbers in organism
  • F14836 - Specific phenotypes were NOT observed.
  • F22416 - Specific phenotypes were NOT observed.
  • F29044 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found