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  3. RAFL09-95-H16

RAFL09-95-H16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09093)

full reading [+] show sequence

Nucleotide sequence: RAFL09-95-H16 - full reading 
ACGCTTCCGA TCTCTAAAAC CTGAGAGAGA GAGAGAGAGA GAGAGAGAGA 
GACAGAGAGA AGTGTTTCAA TAGTTTGGCG TGAAGATGGC CGGAGGAGGC 
GGATACGGCG GCGCATCGGG GAAAGTTGAT TACGTCTTCA AAGTTGTTCT 
AATCGGAGAT TCGGCTGTTG GGAAATCGCA ACTACTTGCT CGATTCGCTA 
GAGACGAATT CAGCATGGAT TCTAAAGCCA CCATCGGCGT CGAGTTCCAA 
ACTCGTACCC TCTCCATTGA ACAAAAAAGC ATTAAGGCTC AGATCTGGGA 
TACCGCTGGT CAGGAAAGAT ACAGAGCCGT TACAAGCGCA TACTACAGAG 
GAGCAGTTGG CGCAATGCTG GTTTATGATA TGACGAAACG TGAGACCTTT 
GAGCATATTC CGCGTTGGCT TGAAGAACTG AGGGCGCACG CTGATAAGAA 
CATTGTCATC ATCCTTATTG GAAACAAGTC TGATCTAGAA GATCAAAGAG 
CTGTTCCCAC TGAAGACGCT AAAGAGTTTG CTGAGAAGGA AGGACTCTTT 
TTCCTCGAGA CCTCTGCTTT AAACGCAACC AATGTCGAAA ACTCCTTCAA 
CACTCTAATG ACTCAGATAT ACAATACCGT GAACAAGAAG AATCTTGCAT 
CTGAAGGCGA CTCAAATAAC CCCGGTTCAT TGGCTGGTAA GAAGATTCTC 
ATCCCAGGTT CTGGACAGGA GATTCCCGCT AAGACCAGCA CTTGTTGTAC 
TTCTTCTTGA TCTGTCTCCT ACTCAAGCAA GATTCATTTT TTTTCCTCCT 
GAAATTTGTG ATAGAGAATG CTACTTTCAT TGTATATTCT TTTTCGAATC 
TGGCTTGTTT GCTAGTTCAT TAAACATTGG TGTGCAATTG GACACCGATA 
GAAAGTATTG GAACAAATAG CTTTTGAATG AAATATGAAA CAAACAGTCT 
TTGAGAGT

Gene models with high sequence identity

  1. AT4G39990.1 [+] show detail - RAB GTPase homolog A4B
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily P-loop containing nucleoside triphosphate hyd 7.7e-62
FPrintScan Ras GTPase 4.1e-40
FPrintScan Ras GTPase 4.1e-40
FPrintScan Ras GTPase 4.1e-40
FPrintScan Ras GTPase 4.1e-40
FPrintScan Ras GTPase 4.1e-40
HMMTigr Small GTP-binding protein 1.3e-34
ProfileScan Small GTPase 36.037
HMMPfam Ras 8.5e-62
HMMPanther Rab11-related 2.7e-95
HMMPanther RAS-RELATED GTPASE 2.7e-95
Gene3D no description 1.1e-61
HMMSmart ADP-ribosylation factor 0.0033
HMMSmart Ras small GTPase, Ras type 9.7e-23
HMMSmart Ras small GTPase, Rab type 1.8e-105
HMMSmart Small GTPase, Rho type 0.0000000015
HMMSmart Ran GTPase 0.00000017

See the detailed result >

AT4G39990.1

Model type
Protein coding
Short Description
RAB GTPase homolog A4B
Curator Summary
GTP-binding protein ATGB3
Computational Description
RAB GTPase homolog A4B (RABA4B); FUNCTIONS IN: GTP binding; INVOLVED IN: endocytic recycling; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4A (TAIR:AT5G65270.1); Has 29206 Blast hits to 29157 proteins in 775 species: Archae - 30; Bacteria - 156; Metazoa - 15160; Fungi - 4303; Plants - 3469; Viruses - 20; Other Eukaryotes - 6068 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-95-H16 introduced

  • F01343 - Specific phenotypes were NOT observed.
  • F03217 - Specific phenotypes were NOT observed.
  • F15914 - seed::increased size / seed::increased length
  • F20651 - Specific phenotypes were NOT observed.
  • F25709 - Specific phenotypes were NOT observed.
  • F27126 - Specific phenotypes were NOT observed.
  • F27443 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / stem::increased thickness / rosette leaf::dark green / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::dark green / whole plant::increased height / fruit::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

7 mutant lines found