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  3. RAFL09-95-K07

RAFL09-95-K07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12386)

full reading [+] show sequence

Nucleotide sequence: RAFL09-95-K07 - full reading 
AAGAACCAAT CCCAAAGCTC ATTTATTCTT TCCTTTTCAA TTATTCTTTC 
AATTTTTCCG ATCGACGGAG GTTGATCGGC GACGGCGTAA TGGCCGGAGG 
AATCGTCTCA CCGGCCTCTC TACTCGACCT AATCGCTGAT ATCGTCGAGA 
TTCCACTCAA CACCGGAATG TTCAAGAAGG ATTGCGCAGA TCTCACTCGA 
CGAGTTTGTC TCTTAACGCA TTTGTTAGAG GAGATTAGAG ACTCAACTCC 
TATCGATTCC GCCGCTTCGT CGTCGTCGGA GAATGATTGT TGGTCTGATC 
TCGTGGTCGG ACTTCAAGCC GCGAAGCGTC TTCTCTCCAC AGCTCGATTC 
CAAGCTCGCG ATTCCTCTGA TGGTGCTGCG AAGAGAATCT CATTTCAGTT 
CCAATGTGTT ACATGGAAGC TTGAGAAAGC ATTGAGCAAT CTTCCATATG 
ATCTTTATGA TATCTCTGAC GAAGTTGGAG AACAAGTGGA GCTAGCGAGA 
TCACAGTTGC GAAGAGCAAT GCAGAGATAT GGATCGTTGA ATTCGAACAA 
GTTCTCGAGT GCTTTATCTG AGCCAATGGA GAGAGATGGT TTTAGTAATG 
TTATAAAGAT CAAAGCTGAG GAAAAGCTTG AGAGTGTTTC AGAAACACTT 
CATTTTGGTG AGGAGGAGGA GAAACAAAGT TCGCCGCCTC TAAGGAGAAG 
CTCTTCCATT TCTTTGGCTT ATTATTTGTC CAAAGATGCT GATACTGATA 
GATTAGACAA AATGGTTAAC AAGAACACTG ATGAATCGAA GAAATCTGAT 
AAACTCACGA TTCCGGTTGA TTTTCTTTGT CCGGTGTCGC TTGAACTGAT 
GAAGGATCCT GTCATTGTTG CCACAGGACA GACTTACGAG AGGGCATACA 
TACAGAGATG GATCGACTGT GGGAATCTAA CATGTCCTAA GACTCAGCAG 
AAACTCGAAA ACTTTACGCT TACACCAAAC TATGTTCTCA GAAGTCTCAT 
CTCTCGGTGG TGCGCTGAAC ACAACATTGA GCAACCTGCA GGTTACATTA 
ACGGCAGGAC AAAAAACAGT GGAGATATGT CGGTGATCCG GGCCTTGGTT 
CAGAGACTCT CAAGCCGGTC AACAGAGGAT CGAAGGAATG CGGTTTCTGA 
AATCCGCTCT CTGTCAAAGA GAAGTACGGA TAATCGCATT CTGATTGCAG 
AAGCAGGAGC AATCCCTGTT TTGGTGAATC TTTTAACCTC AGAGGATGTT 
GCAACGCAGG AAAACGCAAT CACATGTGTT CTCAACCTCT CTATATATGA 
AAACAACAAA GAGCTGATAA TGTTTGCTGG TGCAGTCACC TCAATTGTTC 
AAGTCCTTAG AGCCGGAACC ATGGAAGCAA GAGAAAACGC AGCAGCGACA 
CTTTTTAGCC TGTCGTTAGC CGATGAGAAC AAGATCATAA TAGGCGGGTC 
AGGTGCGATA CCTGCCTTAG TTGATCTGCT CGAGAACGGG ACCCCGAGAG 
GGAAGAAAGA TGCAGCAACG GCATTGTTCA ATCTCTGCAT TTATCATGGA 
AACAAAGGTA GAGCAGTCAG AGCCGGTATA GTAACTGCAT TGGTTAAGAT 
GCTCAGTGAT TCCACCCGCC ACCGGATGGT TGATGAAGCT TTGACAATTC 
TCTCAGTTCT TGCAAATAAT CAAGACGCGA AATCCGCGAT AGTAAAAGCG 
AATACTCTAC CCGCGTTGAT AGGTATTCTC CAAACGGATC AAACTAGAAA 
CCGAGAGAAC GCAGCAGCGA TATTGCTTTC GCTGTGTAAA AGAGACACTG 
AGAAACTGAT CACTATCGGT AGACTCGGTG CGGTTGTCCC GTTAATGGAT 
TTATCGAAGA ATGGAACAGA GAGAGGCAAA AGGAAAGCCA TATCTTTGTT 
AGAGCTTCTT CGTAAAGCAT GCCAATAATA ACTAGTCTTC TGACAAAAAA 
GGTTCATCAA GCTCTCATTT TTATTGAGTT TATTAAATTA TGTTAATATT 
CTTGTTTAAT TGATTTGATT TTTTTTGGAA TTCCATTTGT GGAATCGAAA 
TTGAAGATGG TGAGCGAAAA TGGTGTTCGA AAATCGAACT CTGTTTTGCT 
CGCTGTGTAT TTATTTGTTA CATTTGTAAT AATATTGGAG ATGAAT

Gene models with high sequence identity

  1. AT1G23030.1 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
ProfileScan Armadillo 11.882
ProfileScan Armadillo 8.662
ProfileScan Armadillo 9.537
superfamily Armadillo-type fold 9.5e-68
superfamily RING/U-box 2.7e-10
Gene3D no description 1.2e-27
Gene3D Armadillo-like helical 3.1e-55
HMMPfam Armadillo 1.2e-09
HMMPfam Armadillo 6e-08
HMMPfam U box domain 2.4e-18
HMMSmart U box domain 2.2e-30
HMMSmart Armadillo 4.9e-05
HMMSmart Armadillo 110
HMMSmart Armadillo 0.00014
HMMSmart Armadillo 12
HMMSmart Armadillo 23
HMMPanther VACUOLAR PROTEIN 8-RELATED 2.1e-15
HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 2.1e-15

See the detailed result >

AT1G23030.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71020.1); Has 7493 Blast hits to 5002 proteins in 288 species: Archae - 0; Bacteria - 26; Metazoa - 2087; Fungi - 726; Plants - 3867; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-95-K07 introduced

  • F09322 - Specific phenotypes were NOT observed.
  • F12950 - seed::increased size / seed::increased length
  • F14009 - seed::increased size

Mutant lines with disrupted or induced

6 mutant lines found