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  3. RAFL09-95-L11

RAFL09-95-L11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09100)

full reading [+] show sequence

Nucleotide sequence: RAFL09-95-L11 - full reading 
GTCACATGTT TCGTAACCAA CTTGTCCACA AACTCTTTAA AGTTCATATC 
AGATGATCCA CCGTCCGCCA CGGCGGCCTC GGCCTCCGCC TTCCACCTCC 
GAGCGTTTTC TCTCAGCTCC ACCGCCTTTT CCCCAACTGT GGCCTCAAGC 
AGCTTCTCTG CTACAACCTC CCTCGAAACA ATCATCTCCT CAGCGGCTCC 
GCGGCCTAGT CTCACTCCTG TCTTGAAAAC ATCAGCCAAG TACACCGCAT 
CAGTCACTTG ATCTCCCCAT TGCGGAAAAC AAACAACGGG GACTCCGGCA 
GTTAAAGCCT CCATTGTCGA GTTCCATCCG CAGTGACTTA AGAAACAAGC 
AATCGCAGGA TGAGCCAAGA CTCTCTCTTG GGGACACCAT TCCACGATTT 
TACCCTTTTC TTCGAGCTCT CGAGGCAAAA CATGTGGTTC TACAAATGTC 
CCTTCCATGG GAGGCCGAAC CACCCATAAG ACCGACAAGC CAGAGCTCAA 
AACGCCATGA GCGATCTCCT CCATCTGCTC TTGCTTCAAG TTGGCTATAG 
TCCCAAAGGA GATGTAAACG ACTGAGGATG GTTCTCTTGA GTCAAGCCAT 
TCCATGCAGT CACTCGCTGG CTCGGATATA TCTCCCTTAA CGTCAGAACT 
CAAGGTTTGA GCCATCTTGA AGAGCGGACC GACAGGACTG ATGATGGCTT 
GAGGACAAAG TTGTGACATG TGGTCCATGA TGTCTTTTTC TAGTTCGCGA 
AAAGTGTCGA TGAAAAGATA GAAAGACTTG TGGTTTTCGA ATCTCTTTAA 
CTGGTCTAAA ATGATATCTC CAAAAGCTGT ATACGGAGAC GAAGGGTGAA 
GAAAGCTTGG GATCTCGTCA TGCTTTAACA ATGGCAAGCA AGGGATTTCA 
ACGCTGATGT CCGGCTCGGT TTTGGTCGGG AACTTAACTA ACCGGTGGTG 
GTAATAGTAA TAAGCCGTGA GACAAGCACA AGACTGGACC CATAGAACAG 
CCGAAGGGAT GTGAAGCTCC TCGGCGACAT CACATACCCA TGGGACAAAA 
GCGTTGTTTA TGAGACACGT CACCGGCTCC TTGTTATATC TCTTAACGAG 
ATTCTTGATC TCTTGTTTTC CGACAGCTTC AAGGTGTGGT CGGAAGGCAT 
CGAAGTCGAA TCTTTTTTCA TCGTCGTCGG CGAAGCCGTC AGAGAAGAAC 
TCAAACCGGA TGAAACCTAG ACCGACCGGT TTGAGCACAC CGTCTTGAAT 
CTTGTTGGCT TGACGCATCT TCTTGCCCCA TGGCTTCTCT GTGGTGACAA 
AGGTGACGAG TAAGCCTTTA GAGGCTATGA GCTTTCCGAG ACGAAGTAGA 
GGGTTTACGT GACCTTGGCC GGGGAAAGAT ACGAGCATCA CATGAGTATG 
ACGAGACGGG TCCATGGATT TCTAGTTTCT TTAAGAACTA GAAAGTGGTT 
TTGTTTTCTT TACACTATCA AATTTATGTG AACACCTAAA ACAAAATATC 
AAAAGAAAGT AACAAAACGA GTGGCAAAAA CATACACTTC TCTTCTTCTT 
TGTCTTTTAC TCTTCGTCGA ATCTTGGACG ATCTCTATTC TGAGTCCATG 
TATAGTACAT ATCCCTTTCC AGTGCTTTCC ATCAATTATA AAGGGAAATA 
TTTTTTT

Gene models with high sequence identity

  1. AT4G15490.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
Gene3D no description 7.5e-19
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 4.5e-25
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.6e-50
HMMPanther UDP-GLUCOSYLTRANSFERASE 2.6e-128
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 2.6e-128

See the detailed result >

AT4G15490.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.
Computational Description
UGT84A3; FUNCTIONS IN: UDP-glycosyltransferase activity, sinapate 1-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT4G15500.1); Has 8054 Blast hits to 7973 proteins in 495 species: Archae - 0; Bacteria - 428; Metazoa - 2313; Fungi - 57; Plants - 5089; Viruses - 102; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-95-L11 introduced

  • F14016 - Specific phenotypes were NOT observed.
  • F26432 - Specific phenotypes were NOT observed.
  • F27810 - Specific phenotypes were NOT observed.
  • F29439 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found