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  3. RAFL09-96-F03

RAFL09-96-F03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10020)

full reading [+] show sequence

Nucleotide sequence: RAFL09-96-F03 - full reading 
CTGCCGCTTT TAAATCTCTC ATCTTCTTCC TCGTGTCACT CTTTCTCTCA 
CACTCTGCAA AAACATTTTC TTGTCTCTCC TCTGCCCAAA TTTTTTTTCT 
TTCCAGGAAT ATTTCCTAGA AAAACCCAAG CAAAGCTTTA ACCCCTTCCT 
CCTCCAAAAG TAGCATCTTC CTCTTTTTCT ATTTCTCCTT TCCTCTTCTT 
ATCTCTCTCT CGTTTGTGAA CGATTCCTTA AGAATATAAC CAAAAGCCCT 
TTTCTCCTTT CTTCAACTTT CCGGGAAAAA TCTTCACGCA GCAAGGTTTC 
TCTCTCGGCT CTCGCAGTGT TTTTCGTGCC TTTTGTTCTT TCTATAAAAA 
AAAAATTCGC GTCCTTTAAG AAAACTTTTT CCACCTAGAG AAGAAGAAGA 
GTATCACTCT TGTTGTTCAA GTTTCTCTCT TTAATAAAAA ATCCATCTTT 
ATTCTTTGTC TTCTTTCCTT TTTGCTTTCC CTAATCTCTA TGTTATAAAC 
ACACAGAGAG AAACAAAGTC ACAGTCTCGA GTCAAAAACA GAGAATACGA 
AAGAAAAATG GAAGCGGAGA AGAAAATGGT TCTACCGAGA ATCAAATTCA 
CAGAGCACAA AACCAACACG ACAACAATCG TATCGGAGTT AACCAACACT 
CACCAAACCA GGATTCTTCG TATCTCAGTC ACTGACCCAG ACGCTACTGA 
TTCCTCCAGT GACGACGAAG AAGAAGAACA TCAACGCTTT GTCTCTAAAC 
GCCGTCGTGT TAAGAAGTTT GTCAACGAAG TCTATCTCGA TTCCGGTGCT 
GTTGTTACTG GTAGTTGTGG TCAAATGGAG TCGAAGAAGA AACAAAAGAG 
AGCGGTTAAA TCGGAGTCTA CTGTTTCTCC GGTTGTTTCA GCGACGACGA 
CTACGACGGG AGAGAAGAAG TTCCGAGGAG TGAGACAGCG TCCATGGGGA 
AAATGGGCGG CGGAGATAAG AGATCCGTTG AAACGTGTAC GGCTCTGGTT 
AGGTACTTAC AACACGGCGG AAGAAGCTGC TATGGTTTAC GATAACGCCG 
CTATTCAGCT TCGTGGTCCC GACGCTCTGA CTAATTTCTC AGTCACTCCG 
ACAACAGCGA CGGAGAAGAA AGCCCCACCA CCGTCTCCGG TGAAGAAGAA 
GAAGAAGAAA AACAACAAAA GCAAAAAATC CGTTACTGCT TCTTCCTCCA 
TCAGCAGAAG CAGCAGCAAC GATTGTCTCT GCTCTCCGGT GTCTGTTCTC 
CGATCTCCTT TCGCCGTCGA CGAATTCTCC GGCATTTCTT CATCACCAGT 
CGCGGCCGTT GTAGTCAAGG AAGAGCCATC CATGACAACG GTATCTGAAA 
CTTTCTCTGA TTTCTCGGCG CCCTTGTTCT CAGATGATGA CGTGTTCGAT 
TTCCGGAGCT CAGTGGTTCC CGACTATCTC GGCGGCGATT TATTTGGGGA 
AGATCTATTC ACGGCGGATA TGTGTACGGA TATGAACTTC GGATTCGATT 
TCGGATCCGG ATTATCCAGC TGGCACATGG AGGACCATTT TCAAGATATC 
GGGGATCTAT TCGGGTCGGA TCCTCTTTTA GCTGTTTAAT AATATTTTAA 
ATAAATAAAT AGTTATACCG GCCGTTACTA AACGGAACCG GAGAAAGTTT 
TGTATACCGG TGACATAAAA TCTCGGTTAT GTTCGTAATC TTTTTTTCTT 
TGTTATATAT AAAAATATGA ATGAAACTGA ATTAATGTAA GTTAATGGTG 
ATAATTATTA ACGTTTTAAG TTTTG

Gene models with high sequence identity

  1. AT4G23750.1 [+] show detail - cytokinin response factor 2
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.6e-22
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.1e-37
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 6.6e-16
superfamily DNA-binding, integrase-type 2.7e-23
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.406
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 9.3e-10
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 9.3e-10
Coil coiled-coil 0

See the detailed result >

AT4G23750.1

Model type
Protein coding
Short Description
cytokinin response factor 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.
Computational Description
cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 5899 Blast hits to 5717 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 5881; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-96-F03 introduced

  • F15350 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found