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  3. RAFL09-96-K10

RAFL09-96-K10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09115)

full reading [+] show sequence

Nucleotide sequence: RAFL09-96-K10 - full reading 
ATTCCTTTAA TGGTATTGTT GTTATTACCT TGTATTTCAT CTCCTTGTTT 
TCGTTTTTTC CACACACTCT TGCTTCTCCT ACGGCCCACC GTTGCCGCCA 
TGATCAGAGG GATGCTCTTT TGGAGTTCAA ACACGAGTTT CCGGGAGCAG 
ATATGAACTT CCGGAGACTT GAAAATATGA GGTCATGGAA CAAGAGCAGT 
GATTGCTGTT CTTGGGAGTC TGTCACGTGT GATGCTAAAT ATGGCCAGGT 
GATTTCACTT TATCTTCTTG GCGTTAATCT TAACAACACT TTAAAACCAA 
ATAGTGGTCT TTTCAAACTC CAATATCTCC AAAACCTAAC CCTTCGTTAT 
TGCAATCTCT ATGGAGAGAT TCCTTTTTCA TTAGGAACCC TTTCTCATCT 
CACCTTTCTC GACCTTTCGG AAAATAAATT AGTTGGTCAA GTTCCATCTT 
CAATTGGAAA CTTGACCAAA CTAATGTACC TTCGCCTTTC CATAAACCAC 
TTAAGTGGCA AATCTTCTGT TTCATTTGCC AATTTAACGA AATTGATCCA 
ACTCGACATC AGAGAAAATG ACTTTGAACC CGAGCTTATA CCGGACATGA 
GCCGATTCCA CAACTTGGAG GGATTTGGGG GTGGGAACTT TTTCGGGCCT 
TTTCCTACAT CCTTGTTCAC GATTCCTTCG TTACGATGGG TTAATTTGAG 
GGACAGTAAC AACAACTTCA CGGGACATAT AGATTTTGGG AATTCGTCTT 
TATCTTCTAG GCTTTCTTAT CTTAGTCTTG CTGATAACAA TTTCGATGGC 
CCAATCCCTG AATCCATATC TAAATTTCTC AATCTCGTAT TATTAGATCT 
TCGTAACAAC TCATTTTCCG GGCCTTTCCC AACATCCTTG TTCAAGATTC 
CTTCGTTACA ATGGGTTACT TTGGCGCGAA ACAATTTCAA GGGACCTATA 
GATTTTGGGA ATACATGGCC ATCATCGTCT AGTCTTAGTA GTCTATACCT 
TGCTGATAAC AATTTCGATG GCCAAATCCC AGAATCCATA TCTCAATTTC 
TCAAACTCGA AAGGTTAGAT ATTTCCAACA ATAAGTTGCA AGGCAATGTC 
CCAGGTTGCT TATTGAGATT GTCATCGCTA GAACTTTCTC ACAACTCTTT 
GAGTGGTTTT GGAAAATCAT CACAAGTTCT AGATCAAGCA CAAATGCGAG 
TTTGCGTCTT GATTCTAATT CATTCCAAGG ACCATTTCCA CATTGGATCT 
GCCAGTTTAG ATTGCTGGAG ATTTTAGATT TGTCCAACAA TAGCTTCAGT 
GGCTCAATTC CTCTATGTTT AAGGAATATC ACTTATTCTT TGGAAGTGCT 
TAATCTACGA AACAACAATT TCAGTGGGAT TCTTCCAGAT GTGTTTCTCA 
ATGCTACTCG TTTATACACA CTTGATGTTA CCCGCAACCG GTTGGAAGGT 
AAACTCCCAA AAACCTTGAT CAATTGCACA TCCATGCGAC TTTTGAATGT 
GGAAGGAAAC AAATTCAAGG AGACGTTTCC ATCTTGGTTG GGTTCTATGC 
CATATTTAGA TATCCTCATC CTCCGAGCCA ACCAATTCTA TGGGCCGTTA 
TATCACCTCC ACGAATCTAC TTGGTTTCAA CATTTAAAGG TTATTGATGT 
CTCACATAAT GACTTCACTG GATCCTTCCC AGCTTTCTAT TTTTCCAACT 
GGCTTCAAAT GACTACATTA CACCTAGAAA TTGATGTTGT ATACTTCGAA 
TATCCTACCA TCCAAGATGA TTATGATGAC CCTTATTTTG GTACTTACAC 
TAGTTCAATG GAAATAGTGA ACAAAGGTGT GGATAGAGAG TTTGATAAGA 
TCAGGCAAGA CTTCACATCC ATTGATTTTT CAAGCAACAA GTTTTATGGA 
AAGATCCCTG AATCCATTGG CTTGTTGAAG GGATTACGTT TTCTCAACTT 
GTCGGGTAAT GCTTTCACAA GCGATATACC TCAATCATTG GCAAATTTGA 
CGAATCTCGA GGCATTAGAT TTGTCTCATA ATCAGCTGTC AGGTCAGATT 
CCCCGAGATC TTGGTGAGCT CTCCTTTCTG TCAACCATGA ACTTCGCCCA 
CAACAATCTC GAAGGTCCAA TACCACGCGG AACACAATTT CAACGCCAAA 
ACTGTTCTTC ATTCATGGAC AACCCCAAGC TTTATGGTCT CGATGATATC 
TGCAGAAAAA CTCATGTCCC AAATCCTAGA CCACAAGAAT TAGAGAAAGT 
ATCAGAGCCG GAAGAAGAGC AAGTGATTAA CTGGACATCA GCAGCAATAG 
CGTATGGACC TGGTGTGTTT TGCGGATTAG TGATTGGACA TATCTTCATT 
TCGCATAAGC AGGAGTGGTT AATGGAAAAG TGTCGTAGAA ACAAGCCCAG 
AGTTGTCATC AGAAGCGCTC GTTGAACACG TGTCCTCTCT CTAAGCATTG 
TCAAGCATAT GTATGTGTTT GTAATAACGT TCTCCAAAAA CTCTTTCGTG 
CGTTGTAATG TTCTAATATA TGGTTTTGTA ATAAACGTCT TTGGTGGCGG 
TACGTATTTG ATACATATTG GTTTGAAAAT GCATTCAAAT ACTCTTTTAG 
TTCCT

Gene models with high sequence identity

  1. AT2G24160.1 [+] show detail - pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther LRR RECEPTOR-LIKE KINASE 9e-51
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 9e-51
HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 3.5e-69
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.5e-69
HMMSmart Leucine-rich repeat, typical subtype 22
HMMSmart Leucine-rich repeat, typical subtype 80
HMMSmart Leucine-rich repeat, typical subtype 0.81
Gene3D no description 1.2e-31
Gene3D no description 1.3e-27
Gene3D no description 6.9e-55
Gene3D no description 3.6e-07
superfamily L domain-like 1.3e-62
superfamily L domain-like 1.2e-53
FPrintScan Toll-like receptor, leucine rich repeat-containing 1.3e-06
FPrintScan Toll-like receptor, leucine rich repeat-containing 1.3e-06
FPrintScan Toll-like receptor, leucine rich repeat-containing 5.9e-05
FPrintScan Toll-like receptor, leucine rich repeat-containing 5.9e-05
HMMPfam Leucine-rich repeat 0.14
HMMPfam Leucine-rich repeat 0.036
HMMPfam Leucine-rich repeat 0.58
HMMPfam Leucine-rich repeat 0.019
HMMPfam Leucine-rich repeat 0.0088
HMMPfam Leucine-rich repeat 0.12
HMMPfam Leucine-rich repeat 0.88
HMMPfam Leucine-rich repeat 0.12
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.6e-12

See the detailed result >

AT2G24160.1

Model type
Pseudogene
Computational Description
pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon hirsutum) gi|2808683|emb|CAA05268; blastp match of 37% identity and 8.4e-98 P-value to GP|2808683|emb|CAA05268.1||AJ002235 Cf-4 {Lycopersicon hirsutum}
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-96-K10 introduced

  • F01837 - Specific phenotypes were NOT observed.
  • F08415 - Specific phenotypes were NOT observed.
  • F21411 - rosette leaf::increased size / rosette leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found