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  3. RAFL09-97-L12

RAFL09-97-L12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09139)

full reading [+] show sequence

Nucleotide sequence: RAFL09-97-L12 - full reading 
ATCGATTGAG CTTTCTACTT GAAAACCATC TTTTCCGATC TATCGAATCG 
GAGCGGCGAA GGAAGGAGAA TGGGTGTCCG TACAATATCT CAGGAGGCAT 
TCGACGATCT GGTTAGGGAA AATGTTGAAG ATCTTGGTAT GGATCCCTCC 
GAAGCTCTCG AAGACGCTCT CTACACTCTC AAGCTCCAAG GCGTCGATCT 
CTTTGGGATC ATTACATGTG TTCCTGGAGA AAGTAGCGTT AAGGACAATC 
CGGTGATTGC TTGTTTAGAT AGACTAAAAG AATTCGACAG TGTTTCAATA 
GACGGACCTC TTCGAGATGA GGTTTTCGAT GAGATATCGA GTTTGTTCAA 
GAATCTCAAT GAGCTTTGTA GCAGCCAAGA ATCAGGGAAC GCTGCAATTG 
CGACAAAACA TGGTGCTGTG GATTTAACTT GCTCGATTTG TTCCAAAATC 
AAGATATCTA CTAGAAGTAA TCGTGTTCTT GTTCCTTGCT TTAAGGCTTT 
GGCTGTGTTG ATCCGTGACA TTCAGAGCAC AGAGAGATTC AGGAATTGTA 
CTGGACCAAA TATCGTTGTT GATCTCTTAA ATGATTCCAG CTCCGATTCT 
GATTTGTTAG ATGCTGGTTT TGCGGTTGTT GCTGCTGCAG CAACTGGTAA 
TGAAGTTGTG AAACAGTTAT TCATGGAACT GAAAATCGAT GAACTTATTC 
TGCAAGTGTT GAATAGAGAG AGTAAAACTA CCATTAGAGC TCTGTACGAT 
GCTATTTGTG CTCTTTTGAC TCCAGATGAC TTCCGTGTTG TTGCTTCCCA 
AGTTTATGGT TATGCACGAA CTTTTGCCAA ATTAGGGATT GCGACAGCCC 
TCACTGAAGC ATTACAGGCA GGGATTGGCT CTGATAGTTT GGTGTCAGCA 
AGTACTGCGT TAAAAGCAAT TGCTGTCAAT GATGAAATAT GTAAATCTAT 
TGCTGAATCC GGTGGAATAG ATACACTTCT TCGGTGTATT GATGATAGCG 
GTGAGCAAGG CAACAAAACT GCTGCTAAGA CATGTTGTTC CCTGTTGTCT 
AAGTTGGCAG GAAGTGACTC TAACAAGAGT ACCATAGTTG AGAAGCAAGG 
TCTGGACAAG CTAATCACAC TCGCACTACG ATTCTCTGAT GATCCTCTAG 
TCATACAAGA GGTGATGTTG ATAATCTCTA TAATCTGTCT GAGATCACCA 
GACCACGCAG CCAAGGCTAT AGAAGCTGGA GCTGGTGATC TAGCGGTCCA 
AGCAATGAAG AGGTTCCCAG TAGCTGCTCA AATGCAGAGA AACGCTTGCA 
ACATGATACG GAACATTGCT GTCAGAAGTG CAGAGAACAG AACTATTCTG 
CTTGCTAATG GAATCGAGAA GCTGATAAGA ACTGCTAAAG CCAACAATGA 
GACATGCAGA GCCGCTGCAA CTGATGCACT GAGAGACCTT GGCCTTGATA 
ACTACAATAA CTAAGGTCAA TCTTTCTCCA TTGGTTGGTA CTCGCAACAA 
CCGGAATGAA TCCAGTTTTT TTTTTCAAAA ATTTCATAAA CAGTTTGCAT 
TGAGTTCTCT CTTTTGGGTA GAAGGCATTC CGATCTAGTC TTTTTTGCAA 
CGATTGCTTT TGTTCGAATG CTTGAACATG TAGTAAAATT GAAAGGAATT 
GATTGAAAAT TTCGGT

Gene models with high sequence identity

  1. AT4G33945.1 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Armadillo 0.16
HMMSmart Armadillo 74
HMMSmart Armadillo 22
HMMSmart Armadillo 31
superfamily Armadillo-type fold 2e-34
Gene3D Armadillo-like helical 5.3e-19
HMMPanther gb def: Deoxyribonuclease II precursor (EC 3. 0.00039
HMMPanther Deoxyribonuclease II 0.00039
HMMPanther UNCHARACTERIZED 1.1e-85

See the detailed result >

AT4G33945.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-97-L12 introduced

  • F00901 - seed::decreased size / seed::decreased length
  • F18614 - Specific phenotypes were NOT observed.
  • F19027 - rosette leaf::abnormal / stem::decreased thickness / cauline leaf::decreased width / fruit::abnormal / stem::abnormal
  • F23203 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found