1. Home
  2. Full-length cDNAs
  3. RAFL09-97-M15

RAFL09-97-M15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17937)

full reading [+] show sequence

Nucleotide sequence: RAFL09-97-M15 - full reading 
CCCGATCATC ATCATCGTCA TCTGCGTGTA AAACACACTC ACGCCATCGT 
TGACGTCTCA GATCTTCACA TAAAAGCTTC TATTATCAAA CTCTCTTCCT 
CACGGTAACC CTAACTATCT GTAATTTATC TCTCTACACT TTCTTCATCT 
CTTAATCACC TTAATCATCT TAAGCTTTGT ATTTCTAGAT CCTTCTCCCA 
AAACAACGAT TCGTGATCTC CGTTCTCATA GATCAGTTTC GGATTTGGAT 
ATTTCTTAGG GATTTGTGTG AGATATTTTT AGAATTGTTT CGATTTAGGG 
ATTTGTGTGA AGAAGATGGA TTTTCCAGAG AATTTGCCTT CAGATATAGG 
AAGATTAGAG CAGATTGTTT CTCATTTCTT CCCAAAAGCA TTACACATAG 
TTCTTAATTC CAGAATCCCT TCGTTGCAAT CTCGTGGTCG TACTCGTGAG 
CGTTTATCAG GTCTTAACGT TAGAAAAAGT GACAAATGGT TTAATCTTGT 
GATGGGAGAT CGTCCTGCTG CGTTGGAGAA ATTGCATTCT TGGCATAGGA 
ATATTCTGGA TTCTATGATT ATTGATATCA TTCTTGTCCA TCCGATTTCA 
AACGATAATT TGGATGATGA TGATGATCAT AGTGATTCTG TTGTTAGATC 
AGCTGAGACT GTGATTGAGC GTTGGGTTGT TCAATATGAG AATCCTTTGA 
TTATGTCTCC TCAGAGTTCT GACTCTGCAA CGCGTTACCA GAAGGTTTAC 
AAGAAATCTA TCATTCTGTT GCGGTCTCTT TATGCACAGA CTCGGCTTCT 
TCCTGCTTAT CGTGTCTCTA GGCAGCTGAG TTCTTCTCTT GCTTCTTCTG 
GTTATGATTT GATTTACAAG GTTTCATCTT TCAGTGACAT ATTCTCTGGT 
CCTGTGACGG AAACAATGAA AGAGTTTCGT TTTGCTCCTG TTGAAGTGCC 
TCCTGGTCGT CTTTGTGCAT CGGTTACTTA CCGTTCTGAC TTATCTGATT 
TTAATCTCGG TGCTCATATC ACATTGCCTC CGAGGATTAT AACTGATTAT 
GTGGGAAGTC CTGCAACAGA TCCTATGAGG TTTTTCCCTT CTCCAGGGAG 
AAGTGTTGAA GGCCATTCCT TTACTGGTAG AGCTGGTCGG CCTCCATTGA 
CTGGTTCATC TGCAGAACGT CCGCATAGCT GGACTAGCGG CTTTCACAGA 
CCTCCAGCTC AATTCGCAAC ACCGAACCAA TCTTTTTCGC CAGCTCAGTC 
TCATCAGTTG TCACCTGGGT TACACGATTT CCACTGGTCA CGTACAGATG 
CTTTTGGTGA CAATCACCAG CTTTCACCTC CCTTTTCACC ATCGGGTTCT 
CCATCTACTC CAAGATACAT ATCTGGGGGT AACAGTCCGC GCATTAATGT 
GAGACCAGGG ACTGCTCCAG TGACCATTCC TTCTTCAGCC ACGTTAAATA 
GATACGTTTC ATCTAACTTC TCTGAGCCAG GTAGGAATCC ACTTCCTCCT 
TTTTCCCCCA AAAGCACAAG ACGCTCCCCT TCATCGCAGG ACTCTTTGCC 
TGGGATTGCG TTGTACAGGA GTTCTAGAAG CGGAGAGTCT CCTTCTGGAT 
TAATGAACCA GTACCCTACT CAAAAGCTGT CAAAGGACAG CAAATACGAT 
TCAGGCCGCT TCTCAGGAGT TCTGTCTTCG AGTGACTCAC CAAGATTCGC 
GTTTTCTAGG AGCCCCAGTA GATTATCTTC CCAAGACGAC TTGGATGACC 
CTGATTGTTC ATGCCCTTTT GATTTCGATG ATGTTGATGA GTCAGGACTT 
CAGTACAGCC ATAGTCTTGA CCGGAGGAAA ACTTCAAGCT CTATATCGCA 
GTCGCTACCT CTAGGGAGAA GATCATCACA GGACGCAGCG GTTGGTGTTC 
TGGTTCACAT GCTGAAGACA GCACCACCAT TACGACAAGA CTCAAGCACT 
TATATGGCGT CAATGTCTGG GGTTCAGAGA GAAGGTTCAG TGTCAGGTAC 
AGAATCTGAA TTTTCGATGG CTCGTAGCAC ATCAGATGCA CTAGAGGAAC 
TGAGAAACTA CAAACAGCTC AAAGACTTGC TTCTCTCCAA ATCCAAAAGT 
GGGTCTGGAC CAACTCGCGT CCACTGAGCC AAATCAAAGA GCGATCAAGA 
TATGAGTTAT CCGATGGTTG TTTGTAGATA TGAATTTGAT GACGAATACT 
TAACTCTGTT GTATATTGCC AAAGAGCAAT CACGTTTTGG TTTCTGTAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT3G49590.1 [+] show detail - Autophagy-related protein 13
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G49590.1

Model type
Protein coding
Short Description
Autophagy-related protein 13
Computational Description
Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1); Has 1957 Blast hits to 674 proteins in 207 species: Archae - 0; Bacteria - 87; Metazoa - 293; Fungi - 173; Plants - 114; Viruses - 5; Other Eukaryotes - 1285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-97-M15 introduced

  • F09928 - Specific phenotypes were NOT observed.
  • F16626 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found