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  3. RAFL09-98-A11

RAFL09-98-A11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09143)

full reading [+] show sequence

Nucleotide sequence: RAFL09-98-A11 - full reading 
TTCAAACAAC TTCCTTATTA GCTAGCTCCC TCCCGGCGGC AAACACCAGA 
AGATCCACCG GTTTTGATCT GGTTGTTTGT CGTCGATATG GCGAGGATCT 
CGTGTGACTT GAGATTTCTT CTCATCCCGG CAGCTTTCAT GTTCATCTAC 
ATCCAGATGA GGCTTTTCCA GACGCAATCA CAGTATGCAG ATCGCCTCAG 
TTCCGCTATC GAATCTGAGA ACCATTGCAC TAGTCAAATG CGAGGCCTCA 
TAGATGAAGT TAGCATCAAA CAGTCGCGGA TTGTTGCCCT CGAAGATATG 
AAGAACCGCC AGGACGAAGA ACTTGTGCAG CTTAAGGATC TAATCCAGAC 
GTTTGAAAAA AAAGGAATAG CAAAACTCAC TCAAGGTGGA CAGATGCCTG 
TGGCTGCTGT AGTGGTTATG GCCTGCAGTC GTGCAGACTA TCTTGAAAGG 
ACTGTTAAAT CAGTTTTAAC ATATCAAACT CCCGTTGCTT CAAAATATCC 
TCTATTTATA TCTCAGGATG GATCTGATCA AGCTGTCAAG AGCAAGTCAT 
TGAGCTATAA TCAATTAACA TATATGCAGC ACTTGGATTT TGAACCAGTG 
GTCACTGAAA GGCCTGGCGA ACTGACTGCG TACTACAAGA TTGCACGTCA 
CTACAAGTGG GCACTGGACC AGTTGTTTTA CAAACACAAA TTTAGTCGAG 
TGATTATACT AGAAGATGAT ATGGAAATTG CTCCAGACTT CTTTGATTAC 
TTTGAGGCTG CAGCTAGTCT CATGGATAGG GATAAAACCA TTATGGCTGC 
TTCATCATGG AATGATAATG GACAGAAGCA GTTTGTGCAT GATCCCTATG 
CGCTATACCG ATCAGATTTT TTTCCTGGCC TTGGGTGGAT GCTCAAGAGA 
TCGACTTGGG ATGAGTTATC ACCAAAGTGG CCAAAGGCTT ACTGGGATGA 
TTGGCTGAGA CTAAAGGAAA ACCATAAAGG CCGCCAATTC ATTCGACCGG 
AAGTCTGTAG AACATACAAT TTTGGTGAAC ATGGGTCTAG TTTGGGACAG 
TTTTTCAGTC AGTATCTGGA ACCTATAAAG CTAAACGATG TGACGGTTGA 
CTGGAAAGCA AAGGACCTGG GATACCTGAC AGAGGGAAAC TATACCAAGT 
ACTTTTCTGG CTTAGTGAGA CAAGCACGAC CAATTCAAGG TTCTGACCTT 
GTCTTAAAGG CTCAAAACAT AAAGGATGAT GTTCGTATCC GGTATAAAGA 
CCAAGTAGAG TTTGAACGCA TTGCAGGGGA ATTTGGTATA TTTGAAGAAT 
GGAAGGATGG TGTGCCTCGA ACAGCATATA AAGGAGTAGT GGTGTTTCGA 
ATCCAGACAA CAAGACGTGT ATTCCTGGTT GGGCCAGATT CTGTAATGCA 
GCTTGGAATT CGAAATTCCT GATGCAAAAC ATATGAAAGG AAAAGAAGAT 
TTTGGACCGC ATGCAGCCTC CTTCTAGCAG CTGTTAGGTT GTATTGTTAT 
TTATGGATGA GTTTGTCGAG CGGTGGGGTT AACTTTAACA GCAAGGAAGC 
TCTGGTGACC TGGCTGATTG GCTTAGAAGT TATGGGAACC CCTTGAAAGG 
GTCAGGGTTA AATATATTTC AGTTGTTTTA TTAGTGATTA TCTTGTGGGT 
AACTTATACG AATGCAAATC ATTCTATGCA GTTTTTCTTC GTCCCACTTG 
TTTTGGCTTC TCTATTGCTA GTGTACATAT CTCTTCAAAC ATGTACTAAA 
TAATGCGTGT TGCTTC

Gene models with high sequence identity

  1. AT4G38240.1 [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 2.5e-83
Coil coiled-coil 0
HMMPanther Glycosyl transferase, family 13 1.5e-223
HMMPfam Glycosyl transferase, family 13 9.3e-211
superfamily Nucleotide-diphospho-sugar transferases 6.1e-108

See the detailed result >

AT4G38240.1

Model type
Protein coding
Short Description
alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
Curator Summary
Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.
Computational Description
COMPLEX GLYCAN LESS 1 (CGL1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139); Has 453 Blast hits to 453 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 330; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-98-A11 introduced

  • F06430 - Specific phenotypes were NOT observed.
  • F10119 - Specific phenotypes were NOT observed.
  • F24339 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found