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  3. RAFL09-98-I23

RAFL09-98-I23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09154)

full reading [+] show sequence

Nucleotide sequence: RAFL09-98-I23 - full reading 
ATTTTTACGA ATCCACATAT TCCTGGATCA ACGGGAACCC TTCGTTTCTT 
TCCCACCCGC GTGTTATCCC GTTTCTCAAA TTTCTCATCT TTCCGGGAAA 
ATTCACTTTT TTTTTCCTGG GAAGATTCGT TGTGTTGTGA ATTTTAGTGG 
GCACCTTCAA ATTTTCGATT TTTTTTTTAT TTTCCTTGTC TCTTACCTGA 
TTTGGTGATT TATTATTACA TCAACCACTC GATTCGTTAG ATTTCCGGAT 
TTGAAAAAGA GTCACCAACT TGTACGGATT CTCGTTTTGG GGATCGAGTA 
TTGCTGATTT GTGATTTTGT TGTTTTTGGG TTCTTTCCCT TTGTGGATTC 
GGATCTGGTT GGTGGCTTTG TCAAATGGGC GCATTAGATG AGGGATGTTT 
GAATCTGGAG CTCGACATTG GAATGAAAAA TGGCTGCATT GAGCTTGCTT 
TCGAGCACCA ACCTGAGACT TTAGCAATCC AAGACGCTGT CAAACTTCTC 
TTGCAAGGTC TTCATGAAGA TGTCAATCGG GAAGGCATCA AAAAGACTCC 
TTTCCGTGTC GCCAAGGCCC TTCGTGAAGG GACCAGAGGT TATAAGCAAA 
AGGTGAAGGA CTATGTACAG AGTGCTCTGT TTCCAGAAGC AGGGTTGGAT 
GAAGGAGTTG GGCAAGCAGG AGGAGTCGGA GGACTTGTTG TTGTCAGAGA 
CCTCGATCAT TACTCTTACT GTGAATCTTG CTTGCTTCCT TTTCATGTCA 
AGTGTCACAT AGGTTATGTC CCATCGGGCC AGAGAGTGTT AGGACTGAGC 
AAGTTCTCTA GAGTCACTGA TGTTTTCGCC AAGCGGCTCC AAGACCCTCA 
GCGTTTGGCT GATGATATTT GTTCAGCTCT CCAACATTGG GTCAAACCAG 
CTGGAGTCGC TGTTGTTCTT GAATGCTCTC ACATTCACTT CCCCAGTTTG 
GACTTGGACT CTCTGAACTT GTCTAGCCAC CGTGGATTTG TGAAGCTACT 
GGTTTCCTCG GGGTCAGGAG TTTTCGAGGA TGAAAGCTCG AATCTTTGGG 
GTGAATTTCA GAGTTTCTTG ATGTTCAAAG GTGTAAAAAC GCAAGCTTTG 
TGCAGAAATG GCAGCTCTGT GAAAGAGTGG TGCCCAAGCG TTAAAAGCTC 
GTCTAAATTA TCACCTGAAG TTGACCCGGA AATGGTTTCT GCTGTTGTTT 
CCATCCTGAA ATCACTGGGA GAAGATCCGT TGAGGAAAGA ACTCATTGCT 
ACACCAACTC GATTCCTCAA ATGGATGTTG AACTTCCAAA GAACCAACCT 
CGAAATGAAG CTAAACAGCT TTAACCCTGC CAAAGTCAAT GGCGAGGTCA 
AAGAGAAAAG GCTGCACTGT GAGCTGAACA TGCCCTTCTG GTCAATGTGT 
GAACATCATT TGCTTCCTTT CTATGGAGTT GTTCATATTG GCTACTTTTG 
TGCTGAAGGA TCCAACCCCA ACCCTGTTGG AAGTTCACTC ATGAAAGCGA 
TTGTACACTT TTATGGGTTC AAGCTTCAAG TGCAAGAGAG GATGACTCGA 
CAGATCGCTG AAACGCTATC GCCTCTTGTT GGCGGGGATG TGATTGTTGT 
GGCGGAAGCT GGGCATACTT GTATGATCTC TAGAGGAATT GAGAAGTTTG 
GAAGCAGCAC CGCGACAATC GCAGTTTTGG GTCGGTTTTC GAGTGACAAT 
TCCGCAAGAG CGATGTTTCT AGACAAGATC CATACAACTA ATGCCTTGAA 
GACAGAGTCA AGCTCTCCAT TTTGAGATGG TTTCATGTCT GTTTGTTGTC 
TTTTTTTTAT GCTTCTGCTT GTCTTCTCTT TTTTTTGTTA TATGATAAAT 
ACTTCGGAAG TTGCTAAACT TCGGAAGCAA ACCAATGATT TCTTGGTTTT 
GATT

Gene models with high sequence identity

  1. AT3G07270.1 [+] show detail - GTP cyclohydrolase I
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

Program Description E-value
HMMPanther GTP CYCLOHYDROLASE I 2.4e-91
HMMPfam GTP cyclohydrolase I/Nitrile oxidoreductase 2.3e-15
HMMPfam GTP cyclohydrolase I/Nitrile oxidoreductase 2.6e-21
Gene3D no description 9.6e-10
Gene3D no description 8.4e-24
Gene3D no description 2.2e-35
superfamily Tetrahydrobiopterin biosynthesis enzymes-like 2.8e-55
superfamily Tetrahydrobiopterin biosynthesis enzymes-like 3.7e-46

See the detailed result >

AT3G07270.1

Model type
Protein coding
Short Description
GTP cyclohydrolase I
Computational Description
GTP cyclohydrolase I; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase I/Nitrile oxidoreductase (InterPro:IPR020602); Has 13749 Blast hits to 7133 proteins in 2143 species: Archae - 132; Bacteria - 8697; Metazoa - 425; Fungi - 313; Plants - 76; Viruses - 16; Other Eukaryotes - 4090 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-98-I23 introduced

  • F13513 - rosette leaf::dark green / rosette leaf::decreased width / stem::abnormal / cauline leaf::abnormal / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

1 mutant line founds