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  3. RAFL09-99-G05

RAFL09-99-G05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17944)

full reading [+] show sequence

Nucleotide sequence: RAFL09-99-G05 - full reading 
GAATCAACAA AATCGTCTTC CTCGTTCGTA TCGTTCACTC AGCTTTTTTC 
CCATCTTCTT CTTCGCATCA CATATTCTTC ATTACTAATA TATCTCCTAC 
TCCAGTCTTC CTCCATGAAT TCCTGTAGCT TAGGAGCTCC TAAAGTTAGA 
ATTTTTGCAA CAAATTTCAG TAGATTAAGA TGTGGAAACT TGCTGATACC 
GAACAATCAA AGACTATTTG TTGACCAAAG CCCTATGAAG TATCTGAGTC 
TGAGAACGAC TCTGCGATCT GTGAAAGCTA TCCAATTGTC TACTGTCCCA 
CCTGCAGAAA CAGAAGCTAT TGCAGACGTA AAAGATTCTG ACGAGACCAA 
ATCAACTGTT GTGAATACTC ACCTCATGCC CAAGTCCTCC GAGGTGGAAG 
CACTCATCAG CGAAATCACC GATTCCTCAT CCATTGCAGA GTTTGAACTC 
AAACTGGGAG GTTTCCGCCT GTATGTAGCA AGGAAATTAA CTGACGAAAG 
TAGTCCACCA CCTCAGCAAA TTCAGCCTGT GGTTGCTGCA AGCGCAACTC 
CTGAGGGGGT TCACACTAAT GGCTCAGCTA CTTCTTCGTC ATTGGCTATC 
ACAAAAACAT CATCTTCTTC GGCAGACAGA CCACAAACAC TCGCTAACAA 
AGCTGCTGAT CAGGGTTTAG TGATTCTCCA ATCTCCAACG GTCGGTTATT 
TCAGGAGATC CAAGACCATA AAAGGGAAAC GCACTCCTAC AATCTGTAAA 
GAGAAAGACA TAGTGAAAGA AGGTCAAGTT CTATGCTACA TTGAACAGCT 
CGGTGGCCAA ATCCCAGTTG AGTCTGATGT TTCCGGAGAG ATTGTCAAAA 
TACTCCGCGA AGATGGCGAG CCTGTAGGAT ACAACGATGC TCTCATCACA 
GTACTTCCCT CATTTCCTGG CATCAAGAAG CTTCAGTAAG AACTGATTTT 
GGCTTAATTG TGTTTGTGCT TTGTGTATTT TGCTTCTTAG TTTTTCTCCA 
CATAGACAAA AATAAGCTCT ACTCCAAAAA ATCTTTGTCC GTACCATTAC 
CTTTGTTTTA CCAAAATTTA ATTGAAACTT TTTTGTTTAC CAAAAAAA

Gene models with high sequence identity

  1. AT1G52670.1 [+] show detail - Single hybrid motif superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Biotin/lipoyl attachment 10.834
ProfileScan FERM domain 9.145
HMMPfam Biotin/lipoyl attachment 2.5e-08
superfamily Single hybrid motif 2.9e-11
HMMPanther PYRUVATE CARBOXYLASE 2.4e-05
HMMPanther CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA 2.4e-05
Gene3D no description 3e-10

See the detailed result >

AT1G52670.1

Model type
Protein coding
Short Description
Single hybrid motif superfamily protein
Computational Description
Single hybrid motif superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT3G15690.2); Has 3136 Blast hits to 3136 proteins in 1282 species: Archae - 2; Bacteria - 2438; Metazoa - 2; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-99-G05 introduced

  • F01544 - Specific phenotypes were NOT observed.
  • F03713 - Specific phenotypes were NOT observed.
  • F24823 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found