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  3. RAFL11-01-D24

RAFL11-01-D24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02166)

full reading [+] show sequence

Nucleotide sequence: RAFL11-01-D24 - full reading 
AACTAACACA CTAAGGTTTT CTTACAACCC TCGCAACTCT ATTTAAACAT 
TTATCTTGTG ACGTTTCACA TAACAAGATA TATCTACAAT AACCCCAAGA 
AATTTAACAG AATGAAAGTA ATTACTTCCC TAATCTCTTC TATTTTGCTT 
AAATTCATCC ACAAAGACTT CCATGAGATT TATGCAAGAA TGTCCCTCCT 
CGATCGGTTT CTTCTTCTTA TCGTGCATGG AGTGGATAAG ATGGTTCCAT 
GGCATAAGCT TCCAGTATTC TTGGGGTTAA CCTATCTTGA AGTACGAAGA 
CATCTTCACC AACAATACAA TCTTCTCAAC GTCGGTCAAA CTCCGACTGG 
GATCCGGTTT GATCCTGCTA ATTATCCGTA CCGGACTGCT GACGGAAAAT 
TCAATGATCC CTTTAATGAA GGCGTCGGCA GTCAAAATAG TTTTTTCGGG 
AGAAATTGTC CCCCCGTCGA TCAGAAATCA AAGTTACGGA GGCCAGACCC 
CATGGTGGTG GCGACAAAAC TATTAGGAAG GAAAAAGTTT ATCGACACGG 
GAAAACAATT CAACATGATT GCAGCTTCTT GGATTCAGTT CATGATCCAT 
GATTGGATTG ATCATCTTGA AGACACTCAC CAAATCGAAC TTGTCGCTCC 
AAAAGAAGTA GCGAGCAAGT GTCCCTTAAG CTCCTTTAGG TTCTTAAAGA 
CCAAGGAAGT CCCTACCGGT TTCTTCGAAA TCAAGACTGG CTCGCAAAAT 
ATCCGTACAC CTTGGTGGGA TTCGAGCGTC ATCTATGGAA GCAACTCGAA 
AACATTGGAT AGAGTAAGAA CTTACAAAGA CGGGAAACTA AAGATATCGG 
AGGAGACGGG TCTCCTTCTC CATGACGAAG ACGGTTTAGC TATCTCCGGC 
GACATTCGTA ACAGTTGGGC TGGTGTCTCC GCTTTGCAAG CTCTCTTCAT 
CAAAGAGCAC AACGCCGTAT GCGACGCCCT CAAGGATGAG GATGATGATT 
TGGAAGACGA AGATTTGTAC CGGTACGCTA GGCTAGTGAC CTCAGCCGTG 
GTAGCCAAGA TTCACACCAT AGATTGGACA GTCCAGCTTC TCAAAACCGA 
CACTTTACTT GCTGGGATGC GAGCAAATTG GTACGGACTA CTAGGAAAGA 
AGTTTAAAGA TTCTTTCGGA CATGCAGGCA GTTCGATCTT GGGAGGTGTC 
GTGGGAATGA AGAAACCGCA AAATCATGGG GTCCCTTACT CTCTAACTGA 
AGATTTCACC AGCGTCTATC GAATGCATTC TCTCTTACCT GATCAACTCC 
ATATACTTGA CATTGATGAT GTACCAGGAA CTAATAAATC ACTACCGTTG 
ATTCAAGAGA TTTCTATGAG AGATTTGATT GGTCGCAAGG GAGAAGAAAC 
CATGTCTCAC ATTGGATTCA CTAAGCTAAT GGTCTCAATG GGTCACCAAG 
CAAGTGGTGC CCTTGAACTG ATGAATTATC CGATGTGGTT AAGAGACATT 
GTTCCCCACG ACCCCAACGG CCAAGCTCGT CCAGACCACG TCGACTTAGC 
TGCTTTAGAG ATCTACAGGG ACAGGGAGAG GAGCGTCCCA CGGTACAACG 
AGTTCAGGAG ATCTATGTTT ATGATTCCGA TAACCAAGTG GGAAGATCTA 
ACGGAGGATG AGGAAGCTAT TGAAGTGTTG GATGACGTGT ACGATGGTGA 
TGTGGAGGAG CTTGATCTTC TCGTGGGACT TATGGCAGAG AAGAAAATCA 
AAGGTTTTGC TATCAGTGAG ACTGCTTTTT ACATTTTCCT CATCATGGCC 
ACAAGGCGAT TAGAAGCGGA TAGGTTTTTC ACGAGTGATT TCAATGAAAC 
GATTTACACG AAGAAGGGGC TTGAATGGGT GAATACTACA GAGAGTCTCA 
AGGATGTGAT TGATCGTCAT TATCCTGATA TGACAGACAA ATGGATGAAC 
TCTGAAAGTG CATTTTCAGT ATGGGATTCA CCTCCACTTA CCAAAAATCC 
AATCCCTCTC TATCTCCGAA TTCCCTCTTA ATTTGATCAT TTTAATGTGA 
TCTATGGCAC TTCGAATGAT TTTTTTTCTT CCTTTTTTGG CATTTGTTGG 
CTGTGAGCTG TGTTTCGACA TTGTAATGTA CTATACAGAT AAATAAATGG 
GTGATATACA TGTGATTCAA TAAGTTGTTT GTAATACTCT TTTGTTATAA 
TTAAAATAAT GTATAT

Gene models with high sequence identity

  1. AT3G01420.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Haem peroxidase, animal 1.7e-126
HMMPanther FEEBLY-LIKE PROTEIN 0
HMMPanther PROSTAGLANDIN G/H SYNTHASE 0
Coil coiled-coil 0
ProfileScan Haem peroxidase, animal 70.22
superfamily Haem peroxidase 2.4e-125
Gene3D Haem peroxidase, animal 3.9e-106

See the detailed result >

AT3G01420.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.
Computational Description
DOX1; FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: alpha dioxygenase (TAIR:AT1G73680.1); Has 1465 Blast hits to 1381 proteins in 214 species: Archae - 0; Bacteria - 94; Metazoa - 1085; Fungi - 168; Plants - 70; Viruses - 1; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-01-D24 introduced

  • F07017 - Specific phenotypes were NOT observed.
  • F16518 - Specific phenotypes were NOT observed.
  • F28343 - seed::decreased width

Mutant lines with disrupted or induced

9 mutant lines found