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  3. RAFL11-01-N17

RAFL11-01-N17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07024)

full reading [+] show sequence

Nucleotide sequence: RAFL11-01-N17 - full reading 
AGAGAGAAAG TGTGAAACCA ACTTGTTCAT ATTGAAAAGA ACCATTGCTC 
TCTAGATTAA AAGCTTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT 
CTCTCTCTCT CTCTTTTGGA CTTTCTCAAT CCATATCCCT CTCTCTGTTT 
TTTCTAATTT GAGCCTCTAA AGTCTCCTCG TTTTGTTCAT GTTGTTGTTC 
AAGTGAAGAA GCTCAATTAT GTTTACAACA TTGTTGTAAT TTCAAAACTT 
CATAAGAATT TCTCTGATAA TAAAGAAAAA GCTGGAGTAG AACTATTTTA 
AAGTGTCATC ATGAAGAGAC TAAGCAGCTC AGATTCAATG TGTGGTCTGA 
TCTCCACTTC TACAGATGAA CAGAGTCCAA GAGGGTACGG AAGTAATTAC 
CAATCTATGC TTGAAGGTTA CGATGAAGAT GCTACACTAA TCGAGGAATA 
TTCCGGCAAC CACCACCACA TGGGTCTATC GGAGAAGAAG AGAAGATTAA 
AAGTTGACCA AGTCAAAGCT CTTGAGAAGA ATTTCGAACT TGAGAATAAA 
CTCGAACCTG AGAGGAAAAC TAAATTAGCA CAAGAGCTTG GACTTCAACC 
TCGTCAAGTA GCTGTTTGGT TTCAGAACCG TCGTGCACGG TGGAAAACAA 
AACAGCTTGA AAAAGATTAC GGTGTTCTTA AGGGTCAATA CGATTCTCTC 
CGCCACAATT TCGATTCTCT CCGCAGTGAC AATGATTCCC TTCTCCAAGA 
GATTAGTAAA ATCAAAGCTA AGGTAAACGG TGAAGAAGAT AACAACAACA 
ACAAAGCTAT TACGGAGGGT GTTAAGGAAG AGGAAGTTCA CAAGACGGAT 
TCGATTCCTT CGTCTCCTCT GCAGTTTCTA GAACATTCCT CTGGTTTTAA 
CTACCGGCGA AGCTTCACTG ACCTCCGTGA CCTTCTACCG AATTCCACCG 
TTGTCGAGGC TGGATCTTCC GATAGTTGCG ATTCAAGCGC CGTTCTTAAC 
GACGAAACAA GTTCTGATAA CGGAAGATTG ACGCCGCCTG TGACGGTTAC 
TGGCGGGAGT TTCTTACAGT TTGTGAAAAC AGAGCAAACA GAGGATCACG 
AGGATTTTCT AAGCGGTGAA GAAGCTTGTG GTTTCTTCTC CGATGAACAG 
CCGCCGTCAC TTCATTGGTA CTCTGCTTCA GATCATTGGA CTTGAGAATT 
GTTTATCAAA TTGGTGCTCT GTTTAGTCTC AATGGGAAAA CAGAGAAGAG 
GGCAAAGGTG GAATAATTGA TAAATAAGGA TTAAGGATGA AGGGGATTAT 
TAAATTAAAT CCGCGGGAGA AGTTAATTTT GGGTTTAAGA TTGTAATGGC 
TCTTCATGTA ATTAACGATG TCGAGAGGGG CTTTCACAGA AATAGGAATC 
AATGGGGACA CTCTGATATG AAAGCAATAA AACTACGTTT GACCCCTT

Gene models with high sequence identity

  1. AT4G40060.1 [+] show detail - homeobox protein 16
    E-value: 0; Score: 99.86

 

InterPro Scan Digest

Program Description E-value
HMMPanther HOMEOBOX PROTEIN PRH 6.8e-13
HMMPanther HOMEOBOX PROTEIN 6.8e-13
Coil coiled-coil 0
Coil coiled-coil 0
superfamily Homeodomain-like 2.9e-18
HMMPfam Homeobox 3.3e-16
HMMPfam Leucine zipper, homeobox-associated 2.4e-15
FPrintScan Helix-turn-helix motif, lambda-like repressor 6.8e-06
FPrintScan Helix-turn-helix motif, lambda-like repressor 6.8e-06
Gene3D Homeodomain-related 7.9e-14
ProfileScan Homeobox 16.86
PatternScan Homeobox, conserved site 0
HMMSmart Homeobox 4.3e-17

See the detailed result >

AT4G40060.1

Model type
Protein coding
Short Description
homeobox protein 16
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 16 (HB16); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 6 (TAIR:AT2G22430.1); Has 9713 Blast hits to 9689 proteins in 534 species: Archae - 2; Bacteria - 4; Metazoa - 7673; Fungi - 210; Plants - 1646; Viruses - 5; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-01-N17 introduced

  • F13705 - seed::increased size

Mutant lines with disrupted or induced

5 mutant lines found