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RAFL11-02-D14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07029)

full reading [+] show sequence

Nucleotide sequence: RAFL11-02-D14 - full reading
ATTCTTCTCC TCCTATCGGA CTTTGCCACA CCAGATCGGA AAATCCCAAT 
CCTCTTTTCC TTTGTTTTTT TTGCTATCTT CAATCAAAAA CTCTCCGACA
GATTCAATGA AGCAGCAAAA GAGATAAAAC CCTAACAAAA GTAAACAATC
GGAGTTTTAA TCTTCTTCTT CTTCGGAGCC GGAGTTTTGT CTGATCTGTC
GGAGAGGACG TGTCGGCATC TATTAAAATC CTAGCTGGAC TTCCACATCA
CTTTACTCAA TTAGAAGCTG TTTTGAGTAA CACAAGTAAG TAGTAAGCTT
ATAAAACAAT GGGAACGAGC GAAGACAAGA TGCCATTTAA GACTACCAAA
CCAACATCTT CGGCTCAGGA AGTTCCTCCC ACACCGTATC CAGATTGGCA
AAATTCAATG CAGGCTTATT ATGGCGGAGG AGGTACTCCA AATCCTTTTT
TCCCATCCCC AGTTGGATCT CCTAGTCCTC ACCCCTATAT GTGGGGTGCT
CAACACCATA TGATGCCGCC TTATGGCACC CCAGTTCCGT ACCCAGCAAT
GTATCCCCCG GGGGCAGTCT ATGCTCATCC TAGCATGCCC ATGCCTCCTA
ATTCTGGTCC TACCAACAAG GAGCCTGCGA AGGACCAAGC TTCTGGCAAG
AAGTCAAAGG GGAACGCGAA AAAAAAGGCT GAAGGAGGTG ATAAAGCGCT
CTCTGGTTCA GGGAACGATG GTGCCTCTCA TAGTGATGAA AGTGTCACAG
CGGGTTCATC TGATGAAAAT GATGAGAATG CCAATCAACA GGAACAGGGT
TCAATTCGAA AGCCAAGCTT TGGACAGATG CTTGCTGACG CAAGTTCTCA
AAGTACGACT GGTGAAATCC AAGGTTCGGT GCCCATGAAG CCGGTAGCCC
CGGGGACTAA TCTGAATATC GGGATGGACT TATGGTCTTC CCAAGCTGGT
GTACCAGTGA AGGATGAACG AGAGCTCAAG CGGCAGAAGA GGAAACAATC
TAACCGTGAA TCCGCTAGGC GGTCTAGATT GCGGAAGCAG GCCGAATGCG
AACGACTTCA ACAAAGAGTA GAGAGTTTGT CGAACGAGAA TCAAAGCCTG
AGAGATGAGC TACAGAGACT CTCAAGCGAA TGTGATAAGC TCAAGTCTGA
GAACAACTCA ATCCAGGATG AGTTGCAGAG AGTACTTGGA GCAGAGGCTG
TAGCTAATCT AGAACAGAAT GCTGCTGGGT CGAAAGATGG TGAAGGAACA
AATTAACACT TAGGAAAATT GGAACTTTAC AACGGATTAT TGGGATTTTT
CAACACCGGA TAAAAAAAAC TGAGTCCAAA GTCATTTGAG ATTACGTAAC
TATACAATCG TTTGACATTT TTGTGTAATA GAGATTTGAC CTACAAGACT
GTAGAAGCTG CAAAAGCTAC GATTACACTT TGTTTT

Gene models with high sequence identity

  1. AT4G36730.1 [+] show detail - G-box binding factor 1
    E-value: 0; Score: 99.86

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMSmart Basic-leucine zipper (bZIP) transcription factor 3.3e-22
Gene3D no description 0.00012
PatternScan Basic-leucine zipper (bZIP) transcription factor 0
ProfileScan Basic-leucine zipper (bZIP) transcription factor 13.679
HMMPanther JUN DIMERIZATION PROTEIN-RELATED HUMAN 0.000076
HMMPanther FOS TRANSCRIPTION FACTOR-RELATED 0.000076
HMMPfam G-box binding, MFMR 2.4e-38
HMMPfam bZIP transcription factor, bZIP-1 1.2e-21

See the detailed result >

AT4G36730.1

Model type
Protein coding
Short Description
G-box binding factor 1
Curator Summary
member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box
Computational Description
G-box binding factor 1 (GBF1); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1); Has 3905 Blast hits to 3842 proteins in 356 species: Archae - 8; Bacteria - 123; Metazoa - 1421; Fungi - 442; Plants - 1419; Viruses - 137; Other Eukaryotes - 355 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-02-D14 introduced

  • F00745 - rosette leaf::increased size / rosette leaf::abnormal
  • F14048 - Specific phenotypes were NOT observed.
  • F23715 - Specific phenotypes were NOT observed.
  • F25220 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found