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  3. RAFL11-02-I02

RAFL11-02-I02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10057)

full reading [+] show sequence

Nucleotide sequence: RAFL11-02-I02 - full reading 
ATTCGTCTCA GAGGCCGAGG TTGAAGATTA ATCGGACAAA GGAGATTAGA 
AGAGTAGAAA AAACGACAAG AAGAAAGAAA CACAGTTGCA GGAGAGAAAG 
AGATATGGCT GTCCGGATAA ACGCGATGGC GGTGACGTTT GTGGCGCACG 
CGCTGGCGGT AATAGCGGCG ATTATGGTAC TGGTTTGGAG TATCAGTTAC 
AGAGGTGGAT TGGCCTGGGA AGCTACTAAC AAGAATCTCA TCTTCAATCT 
GCATCCTGTT CTGATGCTCA TCGGATTTAT AATCTTGGGA GGAGAAGCCA 
TCATAAGTTA CAAATCGCTT CCGCTGGAGA AACCAGTGAA GAAGTTGATC 
CACCTTATAC TCCATGCCAT TGCTCTGGCT CTTGGGATAT TTGGCATCTG 
TGCAGCCTTT AAGAACCACA ATGAAAGCCA TATCCCTAAT CTCTACAGTC 
TCCATTCCTG GATTGGTATT GGAGTCATTT CTCTTTATGG CTTCCAGTGG 
GTGTACAGCT TCATAGTGTT CTTCTTCCCA GGAGGATCAA CAAATTTGAA 
AAGCGGATTG CTTCCGTGGC ACGCAATGCT TGGCCTGTTT GTTTACATAC 
TTGCTGTCGG GAATGCAGCT TTAGGGTTTC TGGAAAAGCT GACTTTCTTG 
GAGAATGGAG GGCTTGACAA GTATGGATCC GAAGCATTTC TTATCAACTT 
CACGGCCATT ATCACTATTC TCTTTGGTGC CTTTGTGGTA CTCACTGCTT 
CTGCTGAGTC TCCTTCTCCT TCTCCTTCCG TCTCCAATGA TGATAGTGTT 
GACTTCAGTT ATTCTGCTAT ATAAAACACT TTCTACATTC CACGTTACAT 
CTGTATCGCC CCTTGTACTC TCAAAACTCC ATTTATGTAT GATGCATTTG 
TAGCGAAAAG CTTTGTGTGT TACGGCTTTG CTACTTCTGG TGTGTAAAAT 
CTTCAATGAT ATTGATGAAT CTTTTAAATC ATTTTCTTTT CTTTTCT

Gene models with high sequence identity

  1. AT4G25570.1 [+] show detail - Cytochrome b561/ferric reductase transmembrane protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Cytochrome b561/ferric reductase transmembrane 47.577
HMMPfam Cytochrom_B561 2e-46
HMMSmart Cytochrome b561/ferric reductase transmembrane 1.2e-54
HMMPanther CYTOCHROME B561 5.2e-103

See the detailed result >

AT4G25570.1

Model type
Protein coding
Short Description
Cytochrome b561/ferric reductase transmembrane protein family
Curator Summary
Encodes cytochrome b561.
Computational Description
ACYB-2; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: integral to membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-02-I02 introduced

  • F01019 - Specific phenotypes were NOT observed.
  • F24736 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found