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  3. RAFL11-02-J15

RAFL11-02-J15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02206)

full reading [+] show sequence

Nucleotide sequence: RAFL11-02-J15 - full reading 
GTCTTCAGCA GTCAGTGCGC ATCCGTAGGA GAAAAGTGTG AGAATCTGCC 
ACCATGGGTC GTATGCACAG TCGGGGAAAG GGTATTTCAG CCTCTGCGTT 
GCCTTACAAG AGATCGTCTC CGAGCTGGCT CAAGACCACC TCTCAGGATG 
TTGATGAATC AATCTGCAAA TTTGCCAAAA AGGGATTGAC CCCTTCCCAG 
ATTGGTGTGA TTCTCCGTGA CTCTCACGGT ATCCCTCAGG TCAAGAGTGT 
TACTGGAAGC AAGATCTTGA GGATACTCAA AGCTCATGGC CTTGCTCCTG 
AGATCCCTGA GGATCTGTAC CATCTAATTA AGAAGGCTGT TGCCATCCGT 
AAACATCTCG AGAGGAACAG GAAGGACAAG GATTCCAAGT TCAGGCTCAT 
CTTGGTTGAG AGCAGGATTC ACCGCCTCGC TCGCTATTAC AAGAAGACCA 
AGAAGCTCCC TCCCGTCTGG AAGTACGAAT CCACTACCGC GAGCACCCTT 
GTGGCTTAAG CTGGAGTCTG GAGGAGGATT CTACTAGTCT GTTGCTTCCC 
TTTTGTTTTG ATGAATTCTC AACTTTAGTC ATAATGTGTC AGCAGGATTT 
TTGTGTTTGC CTCTCTTTTT TTTCCGGAAT CTTATGCTCC CTTGTTTAAG 
AGAATCGTAT GATCTTGAAT TTACTATTGA ATAAGCTTTT G

Gene models with high sequence identity

  1. AT4G00100.1 [+] show detail - ribosomal protein S13A
    E-value: 0; Score: 99.57

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein S13/S15, N-terminal 2.9e-30
HMMPfam Ribosomal protein S15 2.7e-24
HMMPanther 40S RIBOSOMAL PROTEIN S13 4.2e-119
HMMPanther RIBOSOMAL PROTEIN S15P/S13E 4.2e-119
superfamily S15/NS1, RNA-binding 1.3e-21
PatternScan Ribosomal protein S15 0

See the detailed result >

AT4G00100.1

Model type
Protein coding
Short Description
ribosomal protein S13A
Curator Summary
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description
ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-02-J15 introduced

  • F02742 - Specific phenotypes were NOT observed.
  • F16550 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found