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  3. RAFL11-03-J07

RAFL11-03-J07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10062)

full reading [+] show sequence

Nucleotide sequence: RAFL11-03-J07 - full reading 
AAAAAAATCT CCACCGCTCT GAGAGAAAAA AGTTGGAAGA GGAGAGAGAG 
AGAGAGCGAC AACGCACCAA CTGTTGCGGC TCAAAGAGAT CTCGATCGGG 
ATCCACAAGA CGGAGATAGA TAGAGAGAGA GTGAGAGCTA ACGGAAATGG 
GATCTCAGCT ACTTGAGTGT TGCTTCCGTT TCGTCTTCTA CTGTCACTCC 
CACAGCTCCA ACTGTTTTCC TTGATTGTTT TTCTTTTATC TCGGCGTTTT 
ACTCGGAAGC TTACAACACA CTCTCTCAGG GATTTGAAAT CCTCACGTTT 
CAGCACATTC TTTGTGGTTC CCATCTATTC TCTAGCCAGT TCGGAGTTGC 
CTGAAGAAAT CAAATGGGTT CGAGATACGC ATCTCACCAG CTCAGCAATG 
GGCTTTTTGT GTCTGGCCGG CCAGAGCAAC CCAAAGAAAA GCCTCCAACA 
ATGAGCTCAG TAGCCATGCC ATACACCGGT GGTGATATCA AGAAATCAGG 
AGAATTGGGG AAGATGTTTG ACATTCCGAC TGATGGGACT AAGTCAAGGA 
AGTCTGGCCC CATAACCGGA GGATCGTCAA GAAGTGGTGC GCAATCAGGT 
CCAGTGCCTA ATGCAACTGG TCGTATGTCT GGCAATTTAG CTTCTGCTGG 
TTCAAATTCA ATGAAGAAAA CAAATTCTGG GCCTTTGTCT AAGCATGGGG 
AGCCTTTAAA GAAATCCTCT GGTCCGCAAT CCGGTGGTGT AACAAGGCAA 
AATTCCGGCC CTATTCCTAT ACTCCCAACT ACAGGTCTCA TAACATCTGG 
GCCAATTACC TCGGGGCCTC TAAATTCATC TGGGGCTCCT AGGAAAATTT 
CTGGTCCTCT AGACTATTCT GGTTCGATGA AGACACATAT GCCTTCAGTT 
GTCCACAACC AGGCGGTAAC TACCCTTGCT CCGGAAGATG ACTTTTCCTG 
CATGAAAAGC TTCCCCAAGC CTGTGCTGTG GCTGGTTATA CTTATATTTG 
TGATGGGGTT CCTCGCTGGA GGCTTCATTC TTGGAGCAGT TCACAATGCA 
ATTCTCCTCA TAGTTGTGGC GGTCTTGTTC ACAGTTGTTG CTGCACTTTT 
CATTTGGAAT ATTTCTTGTG AAAGACGTGG TATCACAGAT TTCATCGCTC 
GTTATCCGGA TGCTGATCTT AGAACTGCCA AAAACGGTCA ATATGTGAAG 
GTCACTGGGG TGGTCACCTG TGGTAACGTG CCTCTTGAAT CATCCTTCCA 
TAGAGTTCCT AGGTGTGTTT ACACGTCTAC TTGTCTATAT GAGTACCGTG 
GATGGGGTTC AAAGCCAGCC AATGCTTCAC ATCGTCGCTT TACATGGGGA 
CTGAGATCAG CAGAGAGGCA TGTGGTAGAC TTCTACATTT CTGATTTCCA 
ATCTGGGCTC AGGGCATTGG TCAAAACTGG AAACGGTGCA AAGGTAACAC 
CGCTTGTCGA TGATTCTGTT GTCATCGATT TTAAGCCAGG AAATGAGCAA 
GCCTCTCCAG ACTTTGTAAG GTGGTTGGGT AAAAAGAATC TAACCAATGA 
TGATCGAATA ATGCGGCTTA AAGAAGGGTA TATCAAAGAA GGAAGCACAG 
TAAGTGTGAT TGGAGTGGTT CAGAGAAACG ATAACGTGTT AATGATAGTC 
CCGACGACAG AACCATTAGC AGCTGGTTGG CAATGGAGTA AGTGCACATT 
CCCTGCAAGT CTTGAAGGAA TTGTATTGAG ATGCGAAGAT TCATCGAACG 
TAGATGCAAT TCCTGTCTGA TGCAGTAGTA GTGGAAGTCT TTCTTTTCCT 
TCTTCTTCCA CGGTTGGTAG ACGAAAATTT CACTGCTCCA CTTCGGCTTC 
ATTAATATTT TTCATGAAAT CTGAAATGTG TTCTTGGTTG GTGGCCTTTT 
CGCTCTCTAC TGATGATGAT TCCTTTGGTT GGTGGTTTAT GGTAGTGTTT 
TCTTTTTCTT CTCTCTTTTA ATATTTCTTA TTTTTTATAT CGAGTTATTA 
TTACATTAGG ATGATAATGA TGATGATGGA TGTGGATTTC TTTTCTACAA 
CTTAATTTGT GTTGTGGGCA CTCTTCTTTG CCTTATGGTT TGTAATTTGT 
AAAGCTCTGC TAGTTATTCT TTTTTCGACC TAATTTGTGA TCTAATGTAA 
TGGGGATTAT CTTTTT

Gene models with high sequence identity

  1. AT1G78882.1 [+] show detail - conserved peptide upstream open reading frame 56
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther UBIQUITIN SPECIFIC PROTEASE UBPY-RELATED 9.9e-129
HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 9.9e-129

See the detailed result >

AT1G78882.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 56
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF56 represents a conserved upstream opening reading frame relative to major ORF AT1G78880.1
Computational Description
conserved peptide upstream open reading frame 56 (CPuORF56); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-03-J07 introduced

  • F29531 - rosette leaf::abnormal / cauline leaf::abnormal / rosette leaf::abnormal / cauline leaf::present in fewer numbers in organism

Mutant lines with disrupted or induced

2 mutant lines found