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RAFL11-03-L16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07044)

full reading [+] show sequence

Nucleotide sequence: RAFL11-03-L16 - full reading 
ATACCCCCTT TAATTTGTTT GCTCTTAGCC TTTACTTTAT AGTTTTATAT 
CATATCAATC GACATGGCGA ATGTGGATCG TGATCGGCGT GTGCATGTAG 
ACCGTACTGA CAAACGTGTT CATCAGCCAA ACTACGAAGA TGATGTCGGT 
TTTGGTGGCT ATGGCGGTTA TGGTGCTGGT TCTGATTATA AGAGTCGCGG 
CCCCTCCACT AACCAAATCT TGGCACTTAT AGCAGGAGTT CCCATTGGTG 
GCACACTGCT AACCCTAGCT GGACTCACTC TAGCCGGTTC GGTGATCGGC 
TTGCTAGTCT CCATACCCCT CTTCCTCCTC TTCAGTCCGG TGATAGTCCC 
GGCGGCTCTC ACTATTGGGC TTGCTGTGAC GGGAATCTTG GCTTCTGGTT 
TGTTTGGGTT GACGGGTCTG AGCTCGGTCT CGTGGGTCCT CAACTACCTC 
CGTGGGACGA GTGATACAGT GCCAGAGCAA TTGGACTACG CTAAACGGCG 
TATGGCTGAT GCGGTAGGCT ATGCTGGTAT GAAGGGAAAA GAGATGGGTC 
AGTATGTGCA AGATAAGGCT CATGAGGCTC GTGAGACTGA GTTCATGACT 
GAGACCCATG AGCCGGGTAA GGCCAGGAGA GGCTCATAAG CTAATATAAA 
TTGCGGGAGT CAGTTGGAAA CGCGATAAAT GTAGTTTTAC TTTTATGTCC 
CAGTTTCTTT CCTCTTTTAA GAATATCTTT GTCTATATAT GTGTTCGTTC 
GTTTTGTCTT GTCCAAATAA AAATCCTTGT TAGTGAAATA AGAAATGAAA 
TAAATATGTT TTCTTT

Gene models with high sequence identity

  1. AT3G27660.1 [+] show detail - oleosin 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Oleosin 0
HMMPfam Oleosin 7e-49

See the detailed result >

AT3G27660.1

Model type
Protein coding
Short Description
oleosin 4
Curator Summary
Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.
Computational Description
oleosin 4 (OLEO4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, lipid storage, seed germination, seed oilbody biogenesis; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: hypocotyl, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: oleosin 2 (TAIR:AT5G40420.1); Has 520 Blast hits to 520 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-03-L16 introduced

  • F01611 - Specific phenotypes were NOT observed.
  • F03146 - Specific phenotypes were NOT observed.
  • F09815 - rosette leaf::decreased size / cauline leaf::decreased size / whole plant::decreased height / stem::abnormal
  • F11002 - rosette leaf::increased size / cauline leaf::decreased size / cauline leaf::dark green / cauline leaf::abnormal / whole plant::increased height / seed::present in fewer numbers in organism / stem::abnormal / root::present in greater numbers in organism
  • F11518 - Specific phenotypes were NOT observed.
  • F14250 - Specific phenotypes were NOT observed.
  • F20219 - Specific phenotypes were NOT observed.
  • F22442 - rosette leaf::abnormal / cauline leaf::decreased width / stem::abnormal
  • F24406 - Specific phenotypes were NOT observed.
  • F29818 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found