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RAFL11-04-K22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17968)

full reading [+] show sequence

Nucleotide sequence: RAFL11-04-K22 - full reading 
CGAAGATGGG TTTCAAACTC ATCTCTCTCC TCCTTCTTTT TCTTCCACTT 
CTAACAGTCA CAATCTTGTC GGGAGTCGAG CAGGCCTTTG CTTCCGACAA 
GGCACTCCTC GTGACCGGCC GCAACATCAC GGCTGACGGT GGAAGGTCGT 
CACTGAGAGG GAAGAAGCAG AGGAGAGCAT CAGGATGTAA CTTGTTCCAA 
GGCCGATGGG TGTTCGATGC TTCTTACCCT TTCTATGACT CGTCCAAGTG 
TCCTTTCATC GACGGCGAGT TTGACTGTCT CAAGTTCGGC CGACCAGACA 
AACAGTTCCT CAAGTACTCT TGGCAACCTG AATCTTGCAC CATCCCAAGG 
TTCGACGGTG GGGCATTTCT GAGGAAATAC AGAGGAAAAC GAGTCATGTT 
CGTCGGAGAC TCACTGAGTT TAAACATGTG GGAATCGTTG GCCTGTATGA 
TCCATGCGTC GGTACCAAAC GCCAAGACCA CTTTTCTCAA GCGTACCCCA 
CTCTCTACTC TCACTTTCCA GGAATATGGA GTAACGTTAT ATCTATATAG 
AACACCATAC ATAGTAGATA TATCCAAAGA GAGAGTTGGG CGTGTGCTTA 
ACCTTGGAGC TATTGAAGGA GGTGCTGATG CTTGGAAAAA CATGGACGTT 
CTTGTCTTCA ACTCTTGGCA TTGGTGGACT CACAAAGGCC AATCTCAAGG 
GTGGGATTAT ATTAGAGATG GGTCGTCTTT GGTGAGAGAC ATGAACCGTC 
TTGACGCTTT CTACAAAGGA CTCAGTACTT GGGCTCGATG GGTTGATCAA 
AACGTCGATA CGGCCAAAAC TCGAGTTTTC TTCCAAGGCA TTTCTCCCAC 
TCATTACGAG GGAAGGGAAT GGAACGAGCC GAGGAAGACT TGTAGTGGGC 
AAATGCAGCC GTTGGGTGGA TCAAGTTACC CAAGTGGTCA GCCTCCATCC 
TCAGGAGTAG TGTCGAAAGT GTTGAGTTCG ATGAAAAAGC CAGTGACCTT 
GCTCGATATC ACAACTTTGT CTCAGTTGAG AAAAGATGCT CATCCTTCTT 
CTTATGGTGG CGATGGAGGA ACAGATTGCA GCCATTGGTG CCTCCCAGGG 
TTGCCTGATA CATGGAACCA ACTTCTCTAC GCAGCTCTTA CGATGTGAAG 
TGTTAAGATA CTAAAAAGAA AGTGCATAAC ACCTTTATTC TGTAAATGAC 
ATTCGTAAAT CTTCTAGTGT TGTGTGATGC TATAGAAAAC AGATTTATAA 
CAAAAGAGAC ATTCTCAGTA TAAAATAACA CATTGGTTTG GTCAAAAAAA 
AAA

Gene models with high sequence identity

  1. AT1G29050.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G29050.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 38
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-04-K22 introduced

  • F01216 - seed::increased size / seed::increased length
  • F04343 - Specific phenotypes were NOT observed.
  • F08238 - Specific phenotypes were NOT observed.
  • F10705 - Specific phenotypes were NOT observed.
  • F15512 - Specific phenotypes were NOT observed.
  • F19750 - Specific phenotypes were NOT observed.
  • F21110 - Specific phenotypes were NOT observed.
  • F21145 - Specific phenotypes were NOT observed.
  • F24802 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found