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  3. RAFL11-04-L09

RAFL11-04-L09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88393)

3 prime EST [+] show sequence

Nucleotide sequence: RAFL11-04-L09 - 3 prime EST 
ACAACAACAA TCACGGTCCA TTCGATTCAA CACTCTTTAG AATTACAAAA 
CACTTTATGT AATAATGTAA GAATGTGAAA GAAGAGCCTC TAATTGAGTC 
CGAGACTCCC TCACTTACTC ACACACACAT TTTAGTTAAC GGTGACTTTA 
CCGACCATAC CAGCACCCTG ATGTGGCGCA AAGTAAAAGC TGTAAGTCCC 
TGGCTCGGTC AAAGCAACCT CGTACGTTTC TCCCGCACCG TTGAGTAGAT 
CTTGCTCGTC CATCGAGATC TTGGCCACGT CGACGCCACT TGGGATTTCG 
TTTTCATTGA AGACAAAATT GTGTGGGTTT CCAGCGTTGT TCTTGAACAC 
AATCTTCTCT CCTTTAGCCT ATAGAGAAGT CGTTGGGAAT AAAAGCTAAC 
GACCCATC

Gene models with high sequence identity

  1. AT1G20340.1 [+] show detail - Cupredoxin superfamily protein
    E-value: 0; Score: 97.79

AT1G20340.1

Model type
Protein coding
Short Description
Cupredoxin superfamily protein
Curator Summary
recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.
Computational Description
DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112 (DRT112); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, response to chemical stimulus, copper ion homeostasis, negative regulation of translation, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin 1 (TAIR:AT1G76100.1); Has 1286 Blast hits to 1278 proteins in 235 species: Archae - 146; Bacteria - 416; Metazoa - 0; Fungi - 2; Plants - 206; Viruses - 5; Other Eukaryotes - 511 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-04-L09 introduced

  • F00811 - Specific phenotypes were NOT observed.
  • F21522 - Specific phenotypes were NOT observed.
  • F28047 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found