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RAFL11-05-B04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17970)

full reading [+] show sequence

Nucleotide sequence: RAFL11-05-B04 - full reading 
CTGGAGCTAA AAACGGTTTC AATCGAATTA AAGTCAATGG CGTCACGTTT 
ATGTCTTCTC CTTCTCGTTG CGTGTATCGC CGGAGCATTT GCCGGAGACG 
TCATCGAACT CAATCGATCT CAGAGGGAGT TCGATTATTT CGCTCTATCT 
CTTCAATGGC CTGGAACCTA TTGCCGTGGA ACTCGCCATT GTTGCTCCAA 
AAACGCTTGC TGCAGAGGCT CCGATGCTCC AACTCAATTC ACAATTCATG 
GGTTATGGCC TGACTATAAC GATGGTTCGT GGCCTTCATG TTGTTATCGA 
TCTGACTTTA AAGAGAAGGA GATTTCAACG TTGATGGATG GTCTTGAGAA 
GTACTGGCCT AGTCTCAGTT GTGGTTCTCC ATCATCATGC AATGGTGGGA 
AAGGGTCATT TTGGGGCCAC GAGTGGGAGT TCCATGCTTA ATCTCACAAC 
CTTTTGCATA ACAAGAAACA TGGGACTTGT TCTTCTCCTG TTTTTCATGA 
TGAGTATAAT TACTTCCTTA CCACACTTAA TCTCTACTTG AAGCATAATG 
TCACGGATGT CCTTTATCAA GCTGGCTATG TTGCTTCCAA CAGTGAAAAG 
TATCCTCTAG GAGGTATCGT AACAGCCATT CAGAATGCAT TTCATATCAC 
CCCTGAAGTG GTTTGCAAAA GAGATGCAAT CGATGAAATA CGTATATGCT 
TCTATAAAGA TTTTAAGCCC AGGGACTGTG TTGGTTCACA AGATTTGACA 
TCTAGAAAGT CATGCCCCAA GTACGTAAGT TTGCCGGAAT ACACGCCATT 
AGATGGTGAA GCTATGGTTC TGAAGATGCC AACAGAAAGA GAAGCTCTTT 
GAATCGGAAA AGATGGGAGC TTTGTTATCT TCTGAGAGAC AATACATACA 
TGTCTCTGAT GTTGTAACTT TACTACCAAA ACCTATAAAG ATTGGCTTAT 
TTCGTTCTAT TGGATATGTA TCATCATTAC TGGTAAATCA AGTTTCTTTC 
TAATAATGTA GAAGATCAGA AAAAAAA

Gene models with high sequence identity

  1. AT2G39780.1 [+] show detail - ribonuclease 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribonuclease T2 5.8e-27
HMMPfam Ribonuclease T2 9.6e-21
superfamily Ribonuclease T2 1.4e-29
superfamily Ribonuclease T2 4.3e-26
HMMPanther RIBONUCLEASE T2 9.8e-29
HMMPanther Ribonuclease T2 9.8e-29
HMMPanther RIBONUCLEASE T2 2.3e-35
HMMPanther Ribonuclease T2 2.3e-35
Gene3D Ribonuclease T2 2.8e-28
Gene3D Ribonuclease T2 1.1e-21
PatternScan Ribonuclease T2, active site 0

See the detailed result >

AT2G39780.1

Model type
Protein coding
Short Description
ribonuclease 2
Curator Summary
S-like ribonuclease
Computational Description
ribonuclease 2 (RNS2); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2318 Blast hits to 2317 proteins in 471 species: Archae - 0; Bacteria - 380; Metazoa - 295; Fungi - 231; Plants - 1299; Viruses - 5; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-05-B04 introduced

  • F22907 - seed::increased size / seed::increased length
  • F22915 - Specific phenotypes were NOT observed.
  • F23930 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height

Mutant lines with disrupted or induced

4 mutant lines found